Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10240

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS10235 and RR42_RS10240 are separated by 20 nucleotidesRR42_RS10240 and RR42_RS10245 are separated by 246 nucleotidesRR42_RS10245 and RR42_RS10250 are separated by 39 nucleotides RR42_RS10235: RR42_RS10235 - hypothetical protein, at 2,190,921 to 2,192,816 _RS10235 RR42_RS10240: RR42_RS10240 - hypothetical protein, at 2,192,837 to 2,193,721 _RS10240 RR42_RS10245: RR42_RS10245 - dehydratase, at 2,193,968 to 2,194,426 _RS10245 RR42_RS10250: RR42_RS10250 - enoyl-CoA hydratase, at 2,194,466 to 2,195,254 _RS10250 Position (kb) 2192 2193 2194Strain fitness (log2 ratio) -2 -1 0 1 2at 2191.862 kb on + strand, within RR42_RS10235at 2191.922 kb on + strand, within RR42_RS10235at 2191.922 kb on + strand, within RR42_RS10235at 2192.080 kb on + strand, within RR42_RS10235at 2192.603 kb on - strand, within RR42_RS10235at 2192.603 kb on - strand, within RR42_RS10235at 2192.679 kb on - strandat 2192.705 kb on - strandat 2192.798 kb on + strandat 2192.901 kb on + strandat 2193.413 kb on - strand, within RR42_RS10240at 2193.421 kb on - strand, within RR42_RS10240at 2193.444 kb on - strand, within RR42_RS10240at 2193.834 kb on - strandat 2193.922 kb on - strandat 2193.976 kb on - strandat 2193.976 kb on - strandat 2193.976 kb on - strandat 2193.976 kb on - strandat 2193.976 kb on - strandat 2194.159 kb on - strand, within RR42_RS10245at 2194.415 kb on - strandat 2194.415 kb on - strandat 2194.599 kb on + strand, within RR42_RS10250at 2194.600 kb on - strand, within RR42_RS10250

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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2,191,862 + RR42_RS10235 0.50 -0.6
2,191,922 + RR42_RS10235 0.53 +0.7
2,191,922 + RR42_RS10235 0.53 -0.6
2,192,080 + RR42_RS10235 0.61 -0.2
2,192,603 - RR42_RS10235 0.89 +0.6
2,192,603 - RR42_RS10235 0.89 +0.9
2,192,679 - -0.3
2,192,705 - -0.4
2,192,798 + -1.5
2,192,901 + -1.3
2,193,413 - RR42_RS10240 0.65 -1.8
2,193,421 - RR42_RS10240 0.66 +1.2
2,193,444 - RR42_RS10240 0.69 -1.4
2,193,834 - -0.1
2,193,922 - -1.9
2,193,976 - -0.9
2,193,976 - +0.5
2,193,976 - -1.2
2,193,976 - +1.3
2,193,976 - +0.8
2,194,159 - RR42_RS10245 0.42 -1.6
2,194,415 - +0.7
2,194,415 - -1.1
2,194,599 + RR42_RS10250 0.17 +0.6
2,194,600 - RR42_RS10250 0.17 +2.1

Or see this region's nucleotide sequence