Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09205 and RR42_RS09210 are separated by 15 nucleotides RR42_RS09210 and RR42_RS09215 are separated by 4 nucleotides RR42_RS09215 and RR42_RS09220 are separated by 71 nucleotides RR42_RS09220 and RR42_RS09225 are separated by 115 nucleotides
RR42_RS09205: RR42_RS09205 - cytochrome C oxidase, at 1,946,969 to 1,947,571
_RS09205
RR42_RS09210: RR42_RS09210 - cbb3-type cytochrome C oxidase subunit III, at 1,947,587 to 1,948,195
_RS09210
RR42_RS09215: RR42_RS09215 - hypothetical protein, at 1,948,200 to 1,948,835
_RS09215
RR42_RS09220: RR42_RS09220 - hypothetical protein, at 1,948,907 to 1,949,428
_RS09220
RR42_RS09225: RR42_RS09225 - DSBA oxidoreductase, at 1,949,544 to 1,951,109
_RS09225
Position (kb)
1948
1949 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1947.230 kb on + strand, within RR42_RS09205 at 1947.231 kb on - strand, within RR42_RS09205 at 1947.234 kb on - strand, within RR42_RS09205 at 1947.236 kb on + strand, within RR42_RS09205 at 1947.236 kb on + strand, within RR42_RS09205 at 1947.236 kb on + strand, within RR42_RS09205 at 1947.237 kb on - strand, within RR42_RS09205 at 1947.237 kb on - strand, within RR42_RS09205 at 1947.378 kb on - strand, within RR42_RS09205 at 1947.378 kb on - strand, within RR42_RS09205 at 1947.503 kb on + strand, within RR42_RS09205 at 1947.706 kb on - strand, within RR42_RS09210 at 1947.722 kb on + strand, within RR42_RS09210 at 1947.723 kb on - strand, within RR42_RS09210 at 1947.723 kb on - strand, within RR42_RS09210 at 1947.723 kb on - strand, within RR42_RS09210 at 1947.998 kb on + strand, within RR42_RS09210 at 1947.998 kb on + strand, within RR42_RS09210 at 1947.999 kb on - strand, within RR42_RS09210 at 1947.999 kb on - strand, within RR42_RS09210 at 1948.194 kb on - strand at 1948.450 kb on - strand, within RR42_RS09215 at 1948.550 kb on - strand, within RR42_RS09215 at 1948.555 kb on + strand, within RR42_RS09215 at 1948.599 kb on + strand, within RR42_RS09215 at 1948.599 kb on + strand, within RR42_RS09215 at 1948.600 kb on - strand, within RR42_RS09215 at 1948.806 kb on + strand at 1948.806 kb on + strand at 1949.181 kb on - strand, within RR42_RS09220 at 1949.268 kb on - strand, within RR42_RS09220 at 1949.268 kb on - strand, within RR42_RS09220 at 1949.271 kb on + strand, within RR42_RS09220 at 1949.271 kb on + strand, within RR42_RS09220 at 1949.271 kb on + strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.272 kb on - strand, within RR42_RS09220 at 1949.475 kb on - strand at 1949.490 kb on + strand at 1949.490 kb on + strand at 1949.491 kb on - strand at 1949.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,947,230 + RR42_RS09205 0.43 -1.6 1,947,231 - RR42_RS09205 0.43 -2.0 1,947,234 - RR42_RS09205 0.44 -2.0 1,947,236 + RR42_RS09205 0.44 +0.2 1,947,236 + RR42_RS09205 0.44 -2.5 1,947,236 + RR42_RS09205 0.44 -0.0 1,947,237 - RR42_RS09205 0.44 -2.2 1,947,237 - RR42_RS09205 0.44 +0.8 1,947,378 - RR42_RS09205 0.68 +0.7 1,947,378 - RR42_RS09205 0.68 -0.0 1,947,503 + RR42_RS09205 0.89 +0.1 1,947,706 - RR42_RS09210 0.20 -0.1 1,947,722 + RR42_RS09210 0.22 +1.4 1,947,723 - RR42_RS09210 0.22 +0.6 1,947,723 - RR42_RS09210 0.22 +2.3 1,947,723 - RR42_RS09210 0.22 -1.6 1,947,998 + RR42_RS09210 0.67 -0.2 1,947,998 + RR42_RS09210 0.67 -1.6 1,947,999 - RR42_RS09210 0.68 +0.2 1,947,999 - RR42_RS09210 0.68 -2.1 1,948,194 - -2.3 1,948,450 - RR42_RS09215 0.39 -0.4 1,948,550 - RR42_RS09215 0.55 -1.4 1,948,555 + RR42_RS09215 0.56 -0.7 1,948,599 + RR42_RS09215 0.63 -0.4 1,948,599 + RR42_RS09215 0.63 +0.5 1,948,600 - RR42_RS09215 0.63 +0.5 1,948,806 + +1.4 1,948,806 + +0.5 1,949,181 - RR42_RS09220 0.52 -3.0 1,949,268 - RR42_RS09220 0.69 +0.6 1,949,268 - RR42_RS09220 0.69 -1.6 1,949,271 + RR42_RS09220 0.70 -1.4 1,949,271 + RR42_RS09220 0.70 -0.8 1,949,271 + RR42_RS09220 0.70 +0.6 1,949,272 - RR42_RS09220 0.70 +0.7 1,949,272 - RR42_RS09220 0.70 +0.3 1,949,272 - RR42_RS09220 0.70 +1.1 1,949,272 - RR42_RS09220 0.70 +1.0 1,949,272 - RR42_RS09220 0.70 +0.1 1,949,272 - RR42_RS09220 0.70 +3.4 1,949,272 - RR42_RS09220 0.70 +1.0 1,949,272 - RR42_RS09220 0.70 +0.2 1,949,475 - -0.3 1,949,490 + -0.3 1,949,490 + -0.6 1,949,491 - -0.8 1,949,662 - +1.1
Or see this region's nucleotide sequence