Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09210

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09200 and RR42_RS09205 are separated by 3 nucleotidesRR42_RS09205 and RR42_RS09210 are separated by 15 nucleotidesRR42_RS09210 and RR42_RS09215 are separated by 4 nucleotidesRR42_RS09215 and RR42_RS09220 are separated by 71 nucleotides RR42_RS09200: RR42_RS09200 - membrane protein, at 1,945,364 to 1,946,965 _RS09200 RR42_RS09205: RR42_RS09205 - cytochrome C oxidase, at 1,946,969 to 1,947,571 _RS09205 RR42_RS09210: RR42_RS09210 - cbb3-type cytochrome C oxidase subunit III, at 1,947,587 to 1,948,195 _RS09210 RR42_RS09215: RR42_RS09215 - hypothetical protein, at 1,948,200 to 1,948,835 _RS09215 RR42_RS09220: RR42_RS09220 - hypothetical protein, at 1,948,907 to 1,949,428 _RS09220 Position (kb) 1947 1948 1949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1946.624 kb on + strand, within RR42_RS09200at 1946.624 kb on + strand, within RR42_RS09200at 1946.678 kb on + strand, within RR42_RS09200at 1946.717 kb on + strand, within RR42_RS09200at 1946.756 kb on + strand, within RR42_RS09200at 1946.814 kb on - strandat 1947.125 kb on + strand, within RR42_RS09205at 1947.125 kb on + strand, within RR42_RS09205at 1947.126 kb on - strand, within RR42_RS09205at 1947.126 kb on - strand, within RR42_RS09205at 1947.126 kb on - strand, within RR42_RS09205at 1947.127 kb on + strand, within RR42_RS09205at 1947.147 kb on - strand, within RR42_RS09205at 1947.230 kb on + strand, within RR42_RS09205at 1947.231 kb on - strand, within RR42_RS09205at 1947.234 kb on - strand, within RR42_RS09205at 1947.236 kb on + strand, within RR42_RS09205at 1947.236 kb on + strand, within RR42_RS09205at 1947.236 kb on + strand, within RR42_RS09205at 1947.237 kb on - strand, within RR42_RS09205at 1947.237 kb on - strand, within RR42_RS09205at 1947.378 kb on - strand, within RR42_RS09205at 1947.378 kb on - strand, within RR42_RS09205at 1947.503 kb on + strand, within RR42_RS09205at 1947.706 kb on - strand, within RR42_RS09210at 1947.722 kb on + strand, within RR42_RS09210at 1947.723 kb on - strand, within RR42_RS09210at 1947.723 kb on - strand, within RR42_RS09210at 1947.723 kb on - strand, within RR42_RS09210at 1947.998 kb on + strand, within RR42_RS09210at 1947.998 kb on + strand, within RR42_RS09210at 1947.999 kb on - strand, within RR42_RS09210at 1947.999 kb on - strand, within RR42_RS09210at 1948.194 kb on - strandat 1948.450 kb on - strand, within RR42_RS09215at 1948.550 kb on - strand, within RR42_RS09215at 1948.555 kb on + strand, within RR42_RS09215at 1948.599 kb on + strand, within RR42_RS09215at 1948.599 kb on + strand, within RR42_RS09215at 1948.600 kb on - strand, within RR42_RS09215at 1948.806 kb on + strandat 1948.806 kb on + strandat 1949.181 kb on - strand, within RR42_RS09220

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,946,624 + RR42_RS09200 0.79 +1.0
1,946,624 + RR42_RS09200 0.79 +0.6
1,946,678 + RR42_RS09200 0.82 +0.4
1,946,717 + RR42_RS09200 0.84 -0.8
1,946,756 + RR42_RS09200 0.87 -0.0
1,946,814 - -2.9
1,947,125 + RR42_RS09205 0.26 +0.5
1,947,125 + RR42_RS09205 0.26 -1.0
1,947,126 - RR42_RS09205 0.26 +0.6
1,947,126 - RR42_RS09205 0.26 +1.2
1,947,126 - RR42_RS09205 0.26 +0.4
1,947,127 + RR42_RS09205 0.26 +1.5
1,947,147 - RR42_RS09205 0.30 -0.1
1,947,230 + RR42_RS09205 0.43 -1.6
1,947,231 - RR42_RS09205 0.43 -2.0
1,947,234 - RR42_RS09205 0.44 -2.0
1,947,236 + RR42_RS09205 0.44 +0.2
1,947,236 + RR42_RS09205 0.44 -2.5
1,947,236 + RR42_RS09205 0.44 -0.0
1,947,237 - RR42_RS09205 0.44 -2.2
1,947,237 - RR42_RS09205 0.44 +0.8
1,947,378 - RR42_RS09205 0.68 +0.7
1,947,378 - RR42_RS09205 0.68 -0.0
1,947,503 + RR42_RS09205 0.89 +0.1
1,947,706 - RR42_RS09210 0.20 -0.1
1,947,722 + RR42_RS09210 0.22 +1.4
1,947,723 - RR42_RS09210 0.22 +0.6
1,947,723 - RR42_RS09210 0.22 +2.3
1,947,723 - RR42_RS09210 0.22 -1.6
1,947,998 + RR42_RS09210 0.67 -0.2
1,947,998 + RR42_RS09210 0.67 -1.6
1,947,999 - RR42_RS09210 0.68 +0.2
1,947,999 - RR42_RS09210 0.68 -2.1
1,948,194 - -2.3
1,948,450 - RR42_RS09215 0.39 -0.4
1,948,550 - RR42_RS09215 0.55 -1.4
1,948,555 + RR42_RS09215 0.56 -0.7
1,948,599 + RR42_RS09215 0.63 -0.4
1,948,599 + RR42_RS09215 0.63 +0.5
1,948,600 - RR42_RS09215 0.63 +0.5
1,948,806 + +1.4
1,948,806 + +0.5
1,949,181 - RR42_RS09220 0.52 -3.0

Or see this region's nucleotide sequence