Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09140 and RR42_RS09145 are separated by 211 nucleotides RR42_RS09145 and RR42_RS09150 are separated by 246 nucleotides RR42_RS09150 and RR42_RS09155 are separated by 29 nucleotides RR42_RS09155 and RR42_RS09160 are separated by 61 nucleotides
RR42_RS09140: RR42_RS09140 - phosphoribosylformylglycinamidine synthase, at 1,930,102 to 1,934,148
_RS09140
RR42_RS09145: RR42_RS09145 - hypothetical protein, at 1,934,360 to 1,934,653
_RS09145
RR42_RS09150: RR42_RS09150 - molybdopterin-binding protein, at 1,934,900 to 1,935,652
_RS09150
RR42_RS09155: RR42_RS09155 - thioredoxin reductase, at 1,935,682 to 1,936,329
_RS09155
RR42_RS09160: RR42_RS09160 - hypothetical protein, at 1,936,391 to 1,937,032
_RS09160
Position (kb) 1934
1935
1936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1934.319 kb on + strand at 1934.323 kb on + strand at 1934.323 kb on + strand at 1934.323 kb on + strand at 1934.392 kb on - strand, within RR42_RS09145 at 1934.400 kb on + strand, within RR42_RS09145 at 1934.401 kb on - strand, within RR42_RS09145 at 1934.401 kb on - strand, within RR42_RS09145 at 1934.584 kb on - strand, within RR42_RS09145 at 1934.584 kb on - strand, within RR42_RS09145 at 1934.758 kb on + strand at 1934.758 kb on + strand at 1934.758 kb on + strand at 1934.758 kb on + strand at 1934.758 kb on + strand at 1934.759 kb on - strand at 1934.759 kb on - strand at 1934.761 kb on + strand at 1934.902 kb on - strand at 1934.920 kb on + strand at 1934.921 kb on - strand at 1934.921 kb on - strand at 1934.921 kb on - strand at 1934.921 kb on - strand at 1934.922 kb on + strand at 1934.922 kb on + strand at 1934.923 kb on - strand at 1934.923 kb on - strand at 1934.923 kb on - strand at 1934.981 kb on - strand, within RR42_RS09150 at 1934.981 kb on - strand, within RR42_RS09150 at 1935.124 kb on - strand, within RR42_RS09150 at 1935.151 kb on + strand, within RR42_RS09150 at 1935.247 kb on + strand, within RR42_RS09150 at 1935.248 kb on - strand, within RR42_RS09150 at 1935.381 kb on + strand, within RR42_RS09150 at 1935.382 kb on - strand, within RR42_RS09150 at 1935.426 kb on + strand, within RR42_RS09150 at 1935.427 kb on - strand, within RR42_RS09150 at 1935.935 kb on + strand, within RR42_RS09155 at 1935.935 kb on + strand, within RR42_RS09155 at 1935.935 kb on + strand, within RR42_RS09155 at 1935.935 kb on + strand, within RR42_RS09155 at 1935.935 kb on + strand, within RR42_RS09155 at 1935.935 kb on + strand, within RR42_RS09155 at 1935.936 kb on - strand, within RR42_RS09155 at 1935.936 kb on - strand, within RR42_RS09155 at 1935.936 kb on - strand, within RR42_RS09155 at 1935.936 kb on - strand, within RR42_RS09155 at 1935.936 kb on - strand, within RR42_RS09155 at 1935.936 kb on - strand, within RR42_RS09155 at 1935.960 kb on - strand, within RR42_RS09155 at 1936.073 kb on + strand, within RR42_RS09155 at 1936.073 kb on + strand, within RR42_RS09155 at 1936.083 kb on - strand, within RR42_RS09155 at 1936.205 kb on + strand, within RR42_RS09155 at 1936.392 kb on + strand at 1936.392 kb on + strand at 1936.392 kb on + strand at 1936.393 kb on - strand at 1936.430 kb on - strand at 1936.588 kb on + strand, within RR42_RS09160 at 1936.589 kb on - strand, within RR42_RS09160
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,934,319 + -2.0 1,934,323 + -0.4 1,934,323 + -2.2 1,934,323 + +1.0 1,934,392 - RR42_RS09145 0.11 +0.5 1,934,400 + RR42_RS09145 0.14 -0.7 1,934,401 - RR42_RS09145 0.14 -2.6 1,934,401 - RR42_RS09145 0.14 +0.4 1,934,584 - RR42_RS09145 0.76 -1.2 1,934,584 - RR42_RS09145 0.76 -3.1 1,934,758 + -1.0 1,934,758 + -0.3 1,934,758 + +1.8 1,934,758 + -0.2 1,934,758 + -0.3 1,934,759 - +0.2 1,934,759 - +0.0 1,934,761 + +0.2 1,934,902 - -0.4 1,934,920 + -2.3 1,934,921 - +1.5 1,934,921 - -0.5 1,934,921 - +1.3 1,934,921 - +0.2 1,934,922 + +1.7 1,934,922 + -1.0 1,934,923 - -1.0 1,934,923 - +2.4 1,934,923 - -0.6 1,934,981 - RR42_RS09150 0.11 -0.2 1,934,981 - RR42_RS09150 0.11 +1.6 1,935,124 - RR42_RS09150 0.30 +0.6 1,935,151 + RR42_RS09150 0.33 -1.3 1,935,247 + RR42_RS09150 0.46 -0.6 1,935,248 - RR42_RS09150 0.46 +1.4 1,935,381 + RR42_RS09150 0.64 -0.0 1,935,382 - RR42_RS09150 0.64 +1.4 1,935,426 + RR42_RS09150 0.70 -2.3 1,935,427 - RR42_RS09150 0.70 -0.8 1,935,935 + RR42_RS09155 0.39 -0.3 1,935,935 + RR42_RS09155 0.39 +0.5 1,935,935 + RR42_RS09155 0.39 +1.0 1,935,935 + RR42_RS09155 0.39 -0.0 1,935,935 + RR42_RS09155 0.39 +0.1 1,935,935 + RR42_RS09155 0.39 +1.7 1,935,936 - RR42_RS09155 0.39 -0.6 1,935,936 - RR42_RS09155 0.39 -0.9 1,935,936 - RR42_RS09155 0.39 +0.9 1,935,936 - RR42_RS09155 0.39 +2.5 1,935,936 - RR42_RS09155 0.39 +0.4 1,935,936 - RR42_RS09155 0.39 -0.6 1,935,960 - RR42_RS09155 0.43 +0.3 1,936,073 + RR42_RS09155 0.60 -0.4 1,936,073 + RR42_RS09155 0.60 -0.0 1,936,083 - RR42_RS09155 0.62 -2.0 1,936,205 + RR42_RS09155 0.81 +3.0 1,936,392 + -1.8 1,936,392 + +0.4 1,936,392 + +1.1 1,936,393 - +0.8 1,936,430 - +0.4 1,936,588 + RR42_RS09160 0.31 -1.0 1,936,589 - RR42_RS09160 0.31 -0.2
Or see this region's nucleotide sequence