Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08755 and RR42_RS08760 are separated by 29 nucleotides RR42_RS08760 and RR42_RS08765 are separated by 55 nucleotides RR42_RS08765 and RR42_RS08770 are separated by 312 nucleotides
RR42_RS08755: RR42_RS08755 - molybdenum cofactor biosynthesis protein MoeA, at 1,834,084 to 1,835,208
_RS08755
RR42_RS08760: RR42_RS08760 - XRE family transcriptional regulator, at 1,835,238 to 1,835,903
_RS08760
RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890
_RS08765
RR42_RS08770: RR42_RS08770 - 2-nitropropane dioxygenase, at 1,838,203 to 1,839,384
_RS08770
Position (kb) 1835
1836
1837
1838 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1835.273 kb on - strand at 1835.600 kb on - strand, within RR42_RS08760 at 1836.551 kb on - strand, within RR42_RS08765 at 1836.841 kb on + strand, within RR42_RS08765 at 1837.154 kb on + strand, within RR42_RS08765 at 1837.155 kb on - strand, within RR42_RS08765 at 1837.155 kb on - strand, within RR42_RS08765 at 1837.157 kb on - strand, within RR42_RS08765 at 1837.310 kb on + strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.982 kb on - strand at 1837.986 kb on + strand at 1837.987 kb on - strand at 1838.133 kb on + strand at 1838.133 kb on + strand at 1838.508 kb on - strand, within RR42_RS08770
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,835,273 - -4.0 1,835,600 - RR42_RS08760 0.54 +1.2 1,836,551 - RR42_RS08765 0.31 +2.0 1,836,841 + RR42_RS08765 0.46 +0.3 1,837,154 + RR42_RS08765 0.62 -0.5 1,837,155 - RR42_RS08765 0.62 +1.4 1,837,155 - RR42_RS08765 0.62 -1.1 1,837,157 - RR42_RS08765 0.62 +0.7 1,837,310 + RR42_RS08765 0.70 +0.5 1,837,311 - RR42_RS08765 0.70 +2.0 1,837,311 - RR42_RS08765 0.70 +1.5 1,837,311 - RR42_RS08765 0.70 +1.5 1,837,981 + -1.3 1,837,981 + +2.8 1,837,981 + +0.0 1,837,982 - -0.3 1,837,986 + +0.1 1,837,987 - +2.1 1,838,133 + +1.0 1,838,133 + -0.2 1,838,508 - RR42_RS08770 0.26 -0.2
Or see this region's nucleotide sequence