Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08615

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS08605 and RR42_RS08610 overlap by 4 nucleotidesRR42_RS08610 and RR42_RS08615 overlap by 4 nucleotidesRR42_RS08615 and RR42_RS08620 are separated by 2 nucleotidesRR42_RS08620 and RR42_RS08625 are separated by 14 nucleotidesRR42_RS08625 and RR42_RS08630 overlap by 1 nucleotides RR42_RS08605: RR42_RS08605 - hypothetical protein, at 1,806,501 to 1,807,010 _RS08605 RR42_RS08610: RR42_RS08610 - peptidoglycan-binding protein, at 1,807,007 to 1,807,813 _RS08610 RR42_RS08615: RR42_RS08615 - membrane protein, at 1,807,810 to 1,808,115 _RS08615 RR42_RS08620: RR42_RS08620 - membrane protein, at 1,808,118 to 1,808,507 _RS08620 RR42_RS08625: RR42_RS08625 - tail protein X, at 1,808,522 to 1,808,725 _RS08625 RR42_RS08630: RR42_RS08630 - head completion/stabilization protein, at 1,808,725 to 1,809,192 _RS08630 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1806.873 kb on + strand, within RR42_RS08605at 1806.926 kb on - strand, within RR42_RS08605at 1807.011 kb on - strandat 1807.044 kb on + strandat 1807.068 kb on + strandat 1807.084 kb on - strandat 1807.098 kb on + strand, within RR42_RS08610at 1807.098 kb on + strand, within RR42_RS08610at 1807.099 kb on - strand, within RR42_RS08610at 1807.146 kb on - strand, within RR42_RS08610at 1807.146 kb on - strand, within RR42_RS08610at 1807.222 kb on - strand, within RR42_RS08610at 1807.222 kb on - strand, within RR42_RS08610at 1807.239 kb on + strand, within RR42_RS08610at 1807.240 kb on - strand, within RR42_RS08610at 1807.340 kb on + strand, within RR42_RS08610at 1807.341 kb on - strand, within RR42_RS08610at 1807.341 kb on - strand, within RR42_RS08610at 1807.341 kb on - strand, within RR42_RS08610at 1807.366 kb on - strand, within RR42_RS08610at 1807.389 kb on - strand, within RR42_RS08610at 1807.449 kb on + strand, within RR42_RS08610at 1807.556 kb on + strand, within RR42_RS08610at 1807.899 kb on - strand, within RR42_RS08615at 1807.899 kb on - strand, within RR42_RS08615at 1808.250 kb on + strand, within RR42_RS08620at 1808.250 kb on + strand, within RR42_RS08620at 1808.250 kb on + strand, within RR42_RS08620at 1808.288 kb on - strand, within RR42_RS08620at 1808.671 kb on - strand, within RR42_RS08625at 1808.818 kb on + strand, within RR42_RS08630at 1808.897 kb on + strand, within RR42_RS08630at 1808.987 kb on + strand, within RR42_RS08630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
1,806,873 + RR42_RS08605 0.73 +0.5
1,806,926 - RR42_RS08605 0.83 -0.4
1,807,011 - -0.6
1,807,044 + +0.4
1,807,068 + +0.2
1,807,084 - +0.4
1,807,098 + RR42_RS08610 0.11 -0.2
1,807,098 + RR42_RS08610 0.11 +0.1
1,807,099 - RR42_RS08610 0.11 -0.4
1,807,146 - RR42_RS08610 0.17 -2.9
1,807,146 - RR42_RS08610 0.17 +2.4
1,807,222 - RR42_RS08610 0.27 +0.7
1,807,222 - RR42_RS08610 0.27 -0.6
1,807,239 + RR42_RS08610 0.29 +2.8
1,807,240 - RR42_RS08610 0.29 -1.4
1,807,340 + RR42_RS08610 0.41 +0.4
1,807,341 - RR42_RS08610 0.41 -1.7
1,807,341 - RR42_RS08610 0.41 +2.0
1,807,341 - RR42_RS08610 0.41 -1.6
1,807,366 - RR42_RS08610 0.44 +0.3
1,807,389 - RR42_RS08610 0.47 +1.7
1,807,449 + RR42_RS08610 0.55 +0.9
1,807,556 + RR42_RS08610 0.68 +0.8
1,807,899 - RR42_RS08615 0.29 +1.0
1,807,899 - RR42_RS08615 0.29 +0.8
1,808,250 + RR42_RS08620 0.34 +0.2
1,808,250 + RR42_RS08620 0.34 -0.6
1,808,250 + RR42_RS08620 0.34 +0.6
1,808,288 - RR42_RS08620 0.44 -1.8
1,808,671 - RR42_RS08625 0.73 -3.4
1,808,818 + RR42_RS08630 0.20 +2.5
1,808,897 + RR42_RS08630 0.37 +0.3
1,808,987 + RR42_RS08630 0.56 +0.4

Or see this region's nucleotide sequence