Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08590

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08580 and RR42_RS08585 overlap by 4 nucleotidesRR42_RS08585 and RR42_RS08590 are separated by 14 nucleotidesRR42_RS08590 and RR42_RS08595 are separated by 281 nucleotidesRR42_RS08595 and RR42_RS08600 overlap by 4 nucleotides RR42_RS08580: RR42_RS08580 - baseplate assembly protein, at 1,803,458 to 1,804,366 _RS08580 RR42_RS08585: RR42_RS08585 - baseplate assembly protein, at 1,804,363 to 1,804,707 _RS08585 RR42_RS08590: RR42_RS08590 - baseplate assembly protein, at 1,804,722 to 1,805,339 _RS08590 RR42_RS08595: RR42_RS08595 - virion morphogenesis protein, at 1,805,621 to 1,806,067 _RS08595 RR42_RS08600: RR42_RS08600 - tail protein, at 1,806,064 to 1,806,504 _RS08600 Position (kb) 1804 1805 1806Strain fitness (log2 ratio) -2 -1 0 1at 1803.936 kb on + strand, within RR42_RS08580at 1803.937 kb on - strand, within RR42_RS08580at 1803.937 kb on - strand, within RR42_RS08580at 1804.017 kb on - strand, within RR42_RS08580at 1804.445 kb on - strand, within RR42_RS08585at 1804.448 kb on + strand, within RR42_RS08585at 1804.490 kb on - strand, within RR42_RS08585at 1804.602 kb on - strand, within RR42_RS08585at 1804.804 kb on - strand, within RR42_RS08590at 1804.962 kb on + strand, within RR42_RS08590at 1805.412 kb on + strandat 1805.412 kb on + strandat 1805.493 kb on + strandat 1805.494 kb on - strandat 1805.594 kb on + strandat 1805.611 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,803,936 + RR42_RS08580 0.53 -1.0
1,803,937 - RR42_RS08580 0.53 +1.0
1,803,937 - RR42_RS08580 0.53 -0.5
1,804,017 - RR42_RS08580 0.61 -1.8
1,804,445 - RR42_RS08585 0.24 -0.1
1,804,448 + RR42_RS08585 0.25 -2.1
1,804,490 - RR42_RS08585 0.37 -0.7
1,804,602 - RR42_RS08585 0.69 -0.2
1,804,804 - RR42_RS08590 0.13 +1.0
1,804,962 + RR42_RS08590 0.39 +0.3
1,805,412 + +0.4
1,805,412 + +0.1
1,805,493 + -0.4
1,805,494 - +0.8
1,805,594 + -0.8
1,805,611 + -2.5

Or see this region's nucleotide sequence