Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06220

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,364,427	+				+0.1
1,364,427	+				-1.7
1,364,427	+				-2.1
1,364,427	+				+1.0
1,364,428	-				-0.6
1,364,428	-				-0.8
1,364,428	-				-0.9
1,364,589	+		RR42_RS06215	0.24	-0.1
1,364,589	+		RR42_RS06215	0.24	-1.8
1,364,614	+		RR42_RS06215	0.27	+0.1
1,364,614	+		RR42_RS06215	0.27	+0.0
1,364,614	+		RR42_RS06215	0.27	+0.4
1,364,615	-		RR42_RS06215	0.27	+2.0
1,364,629	+		RR42_RS06215	0.29	-0.3
1,364,629	+		RR42_RS06215	0.29	-0.2
1,364,629	+		RR42_RS06215	0.29	+1.5
1,364,630	-		RR42_RS06215	0.29	-1.5
1,364,725	+		RR42_RS06215	0.39	+1.8
1,364,726	-		RR42_RS06215	0.39	+1.2
1,364,866	+		RR42_RS06215	0.55	+0.6
1,364,866	+		RR42_RS06215	0.55	-0.0
1,364,867	-		RR42_RS06215	0.55	+0.6
1,364,876	+		RR42_RS06215	0.56	-0.5
1,364,876	+		RR42_RS06215	0.56	+0.3
1,364,987	+		RR42_RS06215	0.69	+0.5
1,364,987	+		RR42_RS06215	0.69	-1.3
1,364,987	+				-0.5
1,364,987	+		RR42_RS06215	0.69	+0.5
1,364,988	-		RR42_RS06215	0.69	+0.2
1,365,117	+		RR42_RS06215	0.83	-1.1
1,365,118	-		RR42_RS06215	0.83	+0.4
1,365,118	-		RR42_RS06215	0.83	+1.7
1,365,207	+				+1.4
1,365,207	+				+0.1
1,365,345	-				-0.9
1,365,412	+				-0.1
1,365,412	+				+0.0
1,365,490	+				-1.2
1,365,490	+				-3.0
1,365,490	+				+1.7
1,365,490	+				-0.9
1,365,490	+				-2.3
1,365,491	-				-0.3
1,365,491	-				+0.5
1,365,491	-				-0.5
1,365,491	-				+0.5
1,365,496	+				-2.7
1,365,497	-				+0.9
1,365,497	-				+0.5
1,365,562	+		RR42_RS06220	0.14	+1.2
1,365,563	-		RR42_RS06220	0.14	+0.9
1,365,610	+		RR42_RS06220	0.18	-0.5
1,365,610	+		RR42_RS06220	0.18	-0.8
1,365,611	-		RR42_RS06220	0.18	-1.5
1,365,620	+		RR42_RS06220	0.19	+2.4
1,365,896	+		RR42_RS06220	0.44	-0.3
1,365,897	-		RR42_RS06220	0.44	-0.0
1,366,006	+		RR42_RS06220	0.54	-1.2
1,366,006	+		RR42_RS06220	0.54	-1.5
1,366,007	-		RR42_RS06220	0.54	-1.7
1,366,007	-		RR42_RS06220	0.54	+1.2
1,366,007	-		RR42_RS06220	0.54	+0.1
1,366,306	+		RR42_RS06220	0.81	-2.8
1,366,307	-		RR42_RS06220	0.81	+0.6
1,366,307	-		RR42_RS06220	0.81	+0.2
1,366,307	-		RR42_RS06220	0.81	-0.4
1,366,581	+				-0.3
1,366,581	+				-1.2
1,366,581	+				-0.9
1,366,582	-				-0.6
1,366,582	-				-0.8
1,366,584	-				+0.8
1,366,584	-				+0.4
1,366,680	+				-0.3
1,366,683	+				-0.0
1,366,683	+				+0.4
1,366,684	-				-1.2
1,366,727	+				+0.6
1,366,727	+				-0.8
1,366,727	+				+1.3
1,366,728	-				-0.3
1,366,728	-				-1.4
1,366,732	+				+0.8
1,366,928	+		RR42_RS06225	0.22	+0.0
1,366,928	+		RR42_RS06225	0.22	-0.9
1,366,928	+		RR42_RS06225	0.22	-0.8
1,366,928	+		RR42_RS06225	0.22	+0.5
1,366,929	-		RR42_RS06225	0.22	-0.9
1,366,978	+		RR42_RS06225	0.28	+1.1
1,366,979	-		RR42_RS06225	0.28	-2.5
1,366,979	-		RR42_RS06225	0.28	-1.5
1,366,979	-		RR42_RS06225	0.28	-1.9
1,367,222	+		RR42_RS06225	0.57	-1.4
1,367,246	+		RR42_RS06225	0.60	-2.6
1,367,337	-		RR42_RS06225	0.71	-1.7
1,367,342	+		RR42_RS06225	0.71	-1.5
1,367,426	-		RR42_RS06225	0.81	-2.1
1,367,447	+		RR42_RS06225	0.84	+0.1
1,367,448	-		RR42_RS06225	0.84	-0.9
1,367,468	+		RR42_RS06225	0.86	-0.7
1,367,469	-		RR42_RS06225	0.86	-0.9