Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04690

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,044,464	+		RR42_RS04680	0.74	-0.2
1,044,807	+				+1.8
1,044,807	+				+1.9
1,044,807	+				-1.5
1,044,807	+				+0.3
1,044,807	+				-0.8
1,044,808	-				-2.3
1,044,808	-				-0.2
1,044,808	-				-0.1
1,044,808	-				-1.5
1,044,812	+				+0.7
1,044,812	+				-0.1
1,044,812	+				-0.8
1,044,812	+				+1.4
1,044,812	+				+1.2
1,044,812	+				-0.3
1,044,812	+				+0.5
1,044,812	+				+0.5
1,044,813	-				+0.0
1,044,813	-				+0.6
1,044,813	-				-0.5
1,044,813	-				+0.5
1,044,813	-				-0.5
1,044,813	-				-1.7
1,044,819	-				-0.5
1,044,879	-		RR42_RS04685	0.12	+0.1
1,045,060	+		RR42_RS04685	0.48	+3.0
1,045,060	+		RR42_RS04685	0.48	-0.3
1,045,060	+		RR42_RS04685	0.48	-1.0
1,045,060	+		RR42_RS04685	0.48	+0.1
1,045,060	+		RR42_RS04685	0.48	+2.0
1,045,104	+		RR42_RS04685	0.56	-1.6
1,045,104	+		RR42_RS04685	0.56	+0.4
1,045,105	-		RR42_RS04685	0.56	-1.3
1,045,105	-		RR42_RS04685	0.56	-0.4
1,045,105	-		RR42_RS04685	0.56	-0.9
1,045,294	+				+0.0
1,045,294	+				-0.3
1,045,384	+				+0.0
1,045,384	+				-0.6
1,045,385	-				-0.1
1,045,385	-				+0.9
1,045,385	-				-0.1
1,045,388	+				+0.5
1,045,388	+				+0.9
1,045,388	+				+1.3
1,045,388	+				-0.1
1,045,389	-				-0.8
1,045,389	-				+0.2
1,045,447	-				-2.3
1,045,519	+				-0.4
1,045,713	+		RR42_RS04690	0.29	-0.2
1,045,713	+		RR42_RS04690	0.29	-0.3
1,045,713	+		RR42_RS04690	0.29	+0.6
1,045,714	-		RR42_RS04690	0.29	+0.4
1,045,714	-		RR42_RS04690	0.29	+0.9
1,045,770	+		RR42_RS04690	0.35	-0.7
1,045,813	+		RR42_RS04690	0.40	-0.3
1,045,814	-		RR42_RS04690	0.40	-1.5
1,045,814	-		RR42_RS04690	0.40	+0.3
1,045,824	+		RR42_RS04690	0.41	+0.2
1,045,824	+		RR42_RS04690	0.41	+1.3
1,045,824	+		RR42_RS04690	0.41	+0.6
1,045,825	-		RR42_RS04690	0.41	+0.8
1,045,825	-		RR42_RS04690	0.41	+0.2
1,045,825	-		RR42_RS04690	0.41	-0.8
1,045,825	-		RR42_RS04690	0.41	+0.3
1,045,875	+		RR42_RS04690	0.47	-1.0
1,046,076	+		RR42_RS04690	0.69	-1.7
1,046,077	-		RR42_RS04690	0.69	+1.3
1,046,083	-		RR42_RS04690	0.69	+1.3
1,046,083	-		RR42_RS04690	0.69	-0.2
1,046,086	-		RR42_RS04690	0.70	+1.0
1,046,234	+		RR42_RS04690	0.86	+2.3
1,046,235	-		RR42_RS04690	0.86	-3.0
1,046,337	+				-3.2
1,046,337	+				-1.7
1,046,337	+				-0.1
1,046,338	-				-0.8
1,046,338	-				+1.0
1,046,338	-				-0.1
1,046,394	+				-1.0
1,046,394	+				-0.3
1,046,394	+				-0.7
1,046,395	-				+0.1
1,046,395	-				-1.1
1,046,395	-				-0.1
1,046,406	+				+0.6
1,046,406	+				+1.5
1,046,407	-				+1.3
1,046,407	-				+0.5
1,046,407	-				+1.0
1,046,408	+				-2.9
1,046,409	-				-1.9
1,046,409	-				-0.7
1,046,409	-				-1.9
1,046,409	-				+1.7
1,046,409	-				+0.4
1,046,409	-				-1.7
1,046,415	+				-0.1
1,046,415	+				-2.5
1,046,416	-				-0.4
1,046,416	-				+0.3
1,046,432	-				+0.1
1,046,537	+				-0.5
1,046,537	+				-0.5
1,046,537	+				+0.6
1,046,537	+				+1.7
1,046,538	-				+1.2
1,046,636	-		RR42_RS04695	0.22	-0.5
1,046,641	+		RR42_RS04695	0.22	-1.5
1,046,765	+		RR42_RS04695	0.43	-0.7
1,046,766	-		RR42_RS04695	0.43	-2.3
1,046,783	+		RR42_RS04695	0.46	+0.3
1,046,783	+		RR42_RS04695	0.46	+0.8
1,046,831	+		RR42_RS04695	0.53	+0.6
1,046,832	-		RR42_RS04695	0.53	-1.1
1,046,832	-		RR42_RS04695	0.53	-1.1