Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04385

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04380 and RR42_RS04385 are separated by 137 nucleotidesRR42_RS04385 and RR42_RS04390 are separated by 104 nucleotides RR42_RS04380: RR42_RS04380 - LysR family transcriptional regulator, at 974,587 to 975,540 _RS04380 RR42_RS04385: RR42_RS04385 - amino acid dehydrogenase, at 975,678 to 976,940 _RS04385 RR42_RS04390: RR42_RS04390 - ABC transporter, at 977,045 to 977,965 _RS04390 Position (kb) 975 976 977Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 974.861 kb on + strand, within RR42_RS04380at 974.862 kb on - strand, within RR42_RS04380at 974.862 kb on - strand, within RR42_RS04380at 975.169 kb on + strand, within RR42_RS04380at 975.169 kb on + strand, within RR42_RS04380at 975.326 kb on + strand, within RR42_RS04380at 975.347 kb on + strand, within RR42_RS04380at 975.591 kb on - strandat 975.591 kb on - strandat 975.602 kb on + strandat 975.602 kb on + strandat 975.603 kb on - strandat 975.634 kb on + strandat 975.822 kb on + strand, within RR42_RS04385at 975.822 kb on + strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.868 kb on + strand, within RR42_RS04385at 976.144 kb on - strand, within RR42_RS04385at 976.394 kb on + strandat 976.394 kb on + strand, within RR42_RS04385at 976.395 kb on - strand, within RR42_RS04385at 976.506 kb on + strand, within RR42_RS04385at 976.506 kb on + strand, within RR42_RS04385at 976.507 kb on - strand, within RR42_RS04385at 976.585 kb on - strand, within RR42_RS04385at 976.585 kb on - strand, within RR42_RS04385at 976.977 kb on - strandat 977.011 kb on - strandat 977.044 kb on + strandat 977.152 kb on + strand, within RR42_RS04390at 977.152 kb on + strand, within RR42_RS04390at 977.222 kb on + strand, within RR42_RS04390at 977.222 kb on + strand, within RR42_RS04390at 977.223 kb on - strand, within RR42_RS04390at 977.224 kb on + strand, within RR42_RS04390at 977.250 kb on - strand, within RR42_RS04390at 977.317 kb on + strand, within RR42_RS04390at 977.684 kb on + strand, within RR42_RS04390at 977.684 kb on + strand, within RR42_RS04390at 977.757 kb on - strand, within RR42_RS04390at 977.757 kb on - strand, within RR42_RS04390at 977.757 kb on - strand, within RR42_RS04390at 977.852 kb on + strand, within RR42_RS04390at 977.853 kb on - strand, within RR42_RS04390at 977.853 kb on - strand, within RR42_RS04390at 977.903 kb on + strandat 977.933 kb on + strandat 977.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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974,861 + RR42_RS04380 0.29 -4.3
974,862 - RR42_RS04380 0.29 -0.4
974,862 - RR42_RS04380 0.29 -2.5
975,169 + RR42_RS04380 0.61 -2.4
975,169 + RR42_RS04380 0.61 -0.6
975,326 + RR42_RS04380 0.77 +0.2
975,347 + RR42_RS04380 0.80 -2.0
975,591 - +0.3
975,591 - +0.7
975,602 + -0.4
975,602 + -0.0
975,603 - -2.0
975,634 + +0.5
975,822 + RR42_RS04385 0.11 +0.1
975,822 + RR42_RS04385 0.11 -0.0
975,823 - RR42_RS04385 0.11 -0.5
975,823 - RR42_RS04385 0.11 -1.5
975,823 - RR42_RS04385 0.11 +0.3
975,823 - RR42_RS04385 0.11 +1.3
975,824 + RR42_RS04385 0.12 -0.3
975,824 + RR42_RS04385 0.12 -0.1
975,824 + RR42_RS04385 0.12 -0.4
975,824 + RR42_RS04385 0.12 +0.0
975,824 + RR42_RS04385 0.12 -0.8
975,824 + RR42_RS04385 0.12 +0.2
975,825 - RR42_RS04385 0.12 -1.9
975,825 - RR42_RS04385 0.12 -1.3
975,825 - RR42_RS04385 0.12 -1.3
975,825 - RR42_RS04385 0.12 +0.7
975,828 + RR42_RS04385 0.12 +1.0
975,828 + RR42_RS04385 0.12 -0.5
975,828 + RR42_RS04385 0.12 +0.2
975,828 + RR42_RS04385 0.12 +0.5
975,828 + RR42_RS04385 0.12 -0.1
975,828 + RR42_RS04385 0.12 -2.4
975,828 + RR42_RS04385 0.12 +0.0
975,828 + RR42_RS04385 0.12 +0.4
975,828 + RR42_RS04385 0.12 +3.2
975,828 + RR42_RS04385 0.12 +0.3
975,828 + RR42_RS04385 0.12 +0.8
975,828 + RR42_RS04385 0.12 +0.8
975,829 - RR42_RS04385 0.12 -0.3
975,829 - RR42_RS04385 0.12 +0.9
975,829 - RR42_RS04385 0.12 -0.2
975,829 - RR42_RS04385 0.12 -1.9
975,829 - RR42_RS04385 0.12 +0.1
975,829 - RR42_RS04385 0.12 -0.7
975,829 - RR42_RS04385 0.12 +0.5
975,829 - RR42_RS04385 0.12 +0.7
975,829 - RR42_RS04385 0.12 +1.1
975,829 - RR42_RS04385 0.12 -1.1
975,868 + RR42_RS04385 0.15 -1.7
976,144 - RR42_RS04385 0.37 -0.4
976,394 + -0.7
976,394 + RR42_RS04385 0.57 +0.0
976,395 - RR42_RS04385 0.57 -0.7
976,506 + RR42_RS04385 0.66 +0.2
976,506 + RR42_RS04385 0.66 -1.6
976,507 - RR42_RS04385 0.66 -0.7
976,585 - RR42_RS04385 0.72 -2.3
976,585 - RR42_RS04385 0.72 -0.4
976,977 - -0.9
977,011 - -1.8
977,044 + -2.6
977,152 + RR42_RS04390 0.12 -1.5
977,152 + RR42_RS04390 0.12 +2.0
977,222 + RR42_RS04390 0.19 -0.6
977,222 + RR42_RS04390 0.19 -1.0
977,223 - RR42_RS04390 0.19 -1.0
977,224 + RR42_RS04390 0.19 -2.7
977,250 - RR42_RS04390 0.22 +1.3
977,317 + RR42_RS04390 0.30 +0.6
977,684 + RR42_RS04390 0.69 -3.0
977,684 + RR42_RS04390 0.69 +0.7
977,757 - RR42_RS04390 0.77 +0.6
977,757 - RR42_RS04390 0.77 -1.5
977,757 - RR42_RS04390 0.77 -1.7
977,852 + RR42_RS04390 0.88 -3.1
977,853 - RR42_RS04390 0.88 +0.1
977,853 - RR42_RS04390 0.88 -0.2
977,903 + +0.3
977,933 + -1.9
977,933 + +0.8

Or see this region's nucleotide sequence