Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04315

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04305 and RR42_RS04310 are separated by 13 nucleotidesRR42_RS04310 and RR42_RS04315 are separated by 133 nucleotidesRR42_RS04315 and RR42_RS04320 are separated by 170 nucleotides RR42_RS04305: RR42_RS04305 - membrane protein, at 956,477 to 957,118 _RS04305 RR42_RS04310: RR42_RS04310 - DNA mismatch repair protein MutS, at 957,132 to 957,836 _RS04310 RR42_RS04315: RR42_RS04315 - thioredoxin reductase, at 957,970 to 958,917 _RS04315 RR42_RS04320: RR42_RS04320 - cell division protein FtsK, at 959,088 to 961,412 _RS04320 Position (kb) 957 958 959Strain fitness (log2 ratio) -2 -1 0 1at 957.056 kb on + strandat 957.056 kb on + strandat 957.056 kb on + strandat 957.057 kb on - strandat 957.057 kb on - strandat 957.210 kb on + strand, within RR42_RS04310at 957.210 kb on + strand, within RR42_RS04310at 957.211 kb on - strand, within RR42_RS04310at 957.645 kb on + strand, within RR42_RS04310at 957.646 kb on - strand, within RR42_RS04310at 957.865 kb on + strandat 957.866 kb on - strandat 957.866 kb on - strandat 957.867 kb on + strandat 957.867 kb on + strandat 957.868 kb on - strandat 957.868 kb on - strandat 957.971 kb on + strandat 957.972 kb on - strandat 957.972 kb on - strandat 958.978 kb on + strandat 958.978 kb on + strandat 958.978 kb on + strandat 958.979 kb on - strandat 958.979 kb on - strandat 958.979 kb on - strandat 958.979 kb on - strandat 958.979 kb on - strandat 958.979 kb on - strandat 959.041 kb on + strandat 959.042 kb on - strandat 959.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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957,056 + +1.4
957,056 + -1.2
957,056 + +0.4
957,057 - -2.5
957,057 - -0.7
957,210 + RR42_RS04310 0.11 -2.2
957,210 + RR42_RS04310 0.11 +1.0
957,211 - RR42_RS04310 0.11 +1.4
957,645 + RR42_RS04310 0.73 -0.2
957,646 - RR42_RS04310 0.73 -0.6
957,865 + -0.2
957,866 - -0.6
957,866 - +1.7
957,867 + -0.1
957,867 + -1.6
957,868 - -0.8
957,868 - +1.2
957,971 + -0.4
957,972 - +0.0
957,972 - +1.0
958,978 + +1.0
958,978 + +0.7
958,978 + +1.3
958,979 - -1.3
958,979 - +0.8
958,979 - -1.2
958,979 - -0.9
958,979 - -0.2
958,979 - +1.0
959,041 + +0.5
959,042 - +0.5
959,042 - -0.4

Or see this region's nucleotide sequence