Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03505 and RR42_RS03510 are separated by 477 nucleotides RR42_RS03510 and RR42_RS03515 are separated by 63 nucleotides RR42_RS03515 and RR42_RS03520 are separated by 49 nucleotides
RR42_RS03505: RR42_RS03505 - replication/virulence associated protein, at 778,131 to 778,712
_RS03505
RR42_RS03510: RR42_RS03510 - ATPase AAA, at 779,190 to 781,910
_RS03510
RR42_RS03515: RR42_RS03515 - hypothetical protein, at 781,974 to 782,507
_RS03515
RR42_RS03520: RR42_RS03520 - type VI secretion protein EvpB, at 782,557 to 784,050
_RS03520
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 778.426 kb on - strand, within RR42_RS03505 at 779.090 kb on + strand at 779.491 kb on - strand, within RR42_RS03510 at 779.609 kb on - strand, within RR42_RS03510 at 779.679 kb on + strand, within RR42_RS03510 at 779.688 kb on - strand, within RR42_RS03510 at 779.769 kb on + strand, within RR42_RS03510 at 780.417 kb on + strand, within RR42_RS03510 at 780.417 kb on + strand, within RR42_RS03510 at 780.417 kb on + strand, within RR42_RS03510 at 780.418 kb on - strand, within RR42_RS03510 at 780.418 kb on - strand, within RR42_RS03510 at 780.418 kb on - strand, within RR42_RS03510 at 780.828 kb on + strand, within RR42_RS03510 at 780.829 kb on - strand, within RR42_RS03510 at 781.114 kb on - strand, within RR42_RS03510 at 781.203 kb on + strand, within RR42_RS03510 at 781.317 kb on + strand, within RR42_RS03510 at 781.318 kb on - strand, within RR42_RS03510 at 781.318 kb on - strand, within RR42_RS03510 at 781.543 kb on - strand, within RR42_RS03510 at 781.842 kb on + strand at 781.843 kb on - strand at 781.843 kb on - strand at 781.973 kb on + strand at 781.973 kb on + strand at 781.974 kb on - strand at 782.030 kb on - strand, within RR42_RS03515 at 782.055 kb on + strand, within RR42_RS03515 at 782.235 kb on - strand, within RR42_RS03515 at 782.376 kb on + strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.474 kb on + strand at 782.526 kb on + strand at 782.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 778,426 - RR42_RS03505 0.51 +0.3 779,090 + +1.5 779,491 - RR42_RS03510 0.11 -0.3 779,609 - RR42_RS03510 0.15 +0.5 779,679 + RR42_RS03510 0.18 -1.5 779,688 - RR42_RS03510 0.18 -0.7 779,769 + RR42_RS03510 0.21 +0.0 780,417 + RR42_RS03510 0.45 -0.2 780,417 + RR42_RS03510 0.45 -0.4 780,417 + RR42_RS03510 0.45 -1.3 780,418 - RR42_RS03510 0.45 -0.5 780,418 - RR42_RS03510 0.45 +0.5 780,418 - RR42_RS03510 0.45 -0.5 780,828 + RR42_RS03510 0.60 +0.5 780,829 - RR42_RS03510 0.60 -0.2 781,114 - RR42_RS03510 0.71 -1.3 781,203 + RR42_RS03510 0.74 -2.8 781,317 + RR42_RS03510 0.78 -2.5 781,318 - RR42_RS03510 0.78 -0.8 781,318 - RR42_RS03510 0.78 -1.3 781,543 - RR42_RS03510 0.86 +0.3 781,842 + +0.6 781,843 - -1.2 781,843 - +0.9 781,973 + +0.9 781,973 + +0.3 781,974 - +1.7 782,030 - RR42_RS03515 0.10 -2.1 782,055 + RR42_RS03515 0.15 +0.6 782,235 - RR42_RS03515 0.49 -1.3 782,376 + RR42_RS03515 0.75 +1.1 782,377 - RR42_RS03515 0.75 -1.4 782,377 - RR42_RS03515 0.75 -1.7 782,377 - RR42_RS03515 0.75 +1.0 782,474 + -1.7 782,526 + -2.0 782,526 + -2.3
Or see this region's nucleotide sequence