Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03260

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03250 and RR42_RS03255 are separated by 39 nucleotidesRR42_RS03255 and RR42_RS03260 overlap by 4 nucleotidesRR42_RS03260 and RR42_RS03265 are separated by 161 nucleotides RR42_RS03250: RR42_RS03250 - MarR family transcriptional regulator, at 720,856 to 721,416 _RS03250 RR42_RS03255: RR42_RS03255 - hypothetical protein, at 721,456 to 721,956 _RS03255 RR42_RS03260: RR42_RS03260 - branched-chain amino acid ABC transporter substrate-binding protein, at 721,953 to 723,071 _RS03260 RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513 _RS03265 Position (kb) 721 722 723 724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 721.007 kb on + strand, within RR42_RS03250at 721.218 kb on - strand, within RR42_RS03250at 721.218 kb on - strand, within RR42_RS03250at 721.221 kb on + strand, within RR42_RS03250at 721.457 kb on + strandat 721.458 kb on - strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.460 kb on - strandat 721.583 kb on + strand, within RR42_RS03255at 721.583 kb on + strand, within RR42_RS03255at 721.583 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.671 kb on - strand, within RR42_RS03255at 721.703 kb on + strand, within RR42_RS03255at 721.703 kb on + strand, within RR42_RS03255at 722.038 kb on + strandat 722.039 kb on - strandat 722.067 kb on - strand, within RR42_RS03260at 722.067 kb on - strand, within RR42_RS03260at 722.180 kb on - strand, within RR42_RS03260at 722.180 kb on - strand, within RR42_RS03260at 722.219 kb on - strand, within RR42_RS03260at 722.242 kb on + strand, within RR42_RS03260at 722.384 kb on - strand, within RR42_RS03260at 722.528 kb on - strand, within RR42_RS03260at 722.704 kb on + strand, within RR42_RS03260at 722.705 kb on - strand, within RR42_RS03260at 722.906 kb on + strand, within RR42_RS03260at 722.907 kb on - strand, within RR42_RS03260at 722.907 kb on - strand, within RR42_RS03260at 722.907 kb on - strand, within RR42_RS03260at 722.908 kb on + strand, within RR42_RS03260at 723.195 kb on - strandat 723.195 kb on - strandat 723.234 kb on + strandat 723.285 kb on + strandat 723.286 kb on - strandat 723.463 kb on - strand, within RR42_RS03265at 723.519 kb on + strand, within RR42_RS03265at 723.520 kb on - strand, within RR42_RS03265at 723.520 kb on - strand, within RR42_RS03265at 723.599 kb on + strand, within RR42_RS03265at 723.654 kb on + strand, within RR42_RS03265at 723.654 kb on + strand, within RR42_RS03265at 723.655 kb on - strand, within RR42_RS03265at 723.655 kb on - strand, within RR42_RS03265at 723.918 kb on + strand, within RR42_RS03265at 723.918 kb on + strand, within RR42_RS03265at 723.919 kb on - strand, within RR42_RS03265at 723.988 kb on - strand, within RR42_RS03265

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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721,007 + RR42_RS03250 0.27 -0.5
721,218 - RR42_RS03250 0.65 +1.7
721,218 - RR42_RS03250 0.65 -0.2
721,221 + RR42_RS03250 0.65 -0.7
721,457 + +0.8
721,458 - -0.7
721,459 + +0.5
721,459 + -0.8
721,459 + +1.2
721,459 + +1.6
721,459 + -0.7
721,460 - -3.8
721,583 + RR42_RS03255 0.25 +0.9
721,583 + RR42_RS03255 0.25 +0.2
721,583 + RR42_RS03255 0.25 +0.2
721,670 + RR42_RS03255 0.43 -0.3
721,670 + RR42_RS03255 0.43 -0.2
721,670 + RR42_RS03255 0.43 +1.2
721,670 + RR42_RS03255 0.43 -0.4
721,671 - RR42_RS03255 0.43 +1.7
721,703 + RR42_RS03255 0.49 +0.7
721,703 + RR42_RS03255 0.49 -0.8
722,038 + -2.0
722,039 - +0.8
722,067 - RR42_RS03260 0.10 +0.8
722,067 - RR42_RS03260 0.10 +0.8
722,180 - RR42_RS03260 0.20 -0.0
722,180 - RR42_RS03260 0.20 -1.2
722,219 - RR42_RS03260 0.24 +0.4
722,242 + RR42_RS03260 0.26 +0.1
722,384 - RR42_RS03260 0.39 -2.3
722,528 - RR42_RS03260 0.51 -1.1
722,704 + RR42_RS03260 0.67 -0.0
722,705 - RR42_RS03260 0.67 -0.7
722,906 + RR42_RS03260 0.85 -1.0
722,907 - RR42_RS03260 0.85 +0.1
722,907 - RR42_RS03260 0.85 +0.3
722,907 - RR42_RS03260 0.85 +0.3
722,908 + RR42_RS03260 0.85 -1.2
723,195 - -0.2
723,195 - -2.8
723,234 + +0.3
723,285 + +0.5
723,286 - +2.3
723,463 - RR42_RS03265 0.18 +1.9
723,519 + RR42_RS03265 0.22 -0.0
723,520 - RR42_RS03265 0.22 -1.6
723,520 - RR42_RS03265 0.22 +2.3
723,599 + RR42_RS03265 0.29 -2.0
723,654 + RR42_RS03265 0.33 +1.8
723,654 + RR42_RS03265 0.33 -2.2
723,655 - RR42_RS03265 0.33 -0.8
723,655 - RR42_RS03265 0.33 -0.5
723,918 + RR42_RS03265 0.53 -0.0
723,918 + RR42_RS03265 0.53 +1.3
723,919 - RR42_RS03265 0.54 +2.2
723,988 - RR42_RS03265 0.59 +0.3

Or see this region's nucleotide sequence