Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02815

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02805 and RR42_RS02810 overlap by 4 nucleotidesRR42_RS02810 and RR42_RS02815 are separated by 17 nucleotidesRR42_RS02815 and RR42_RS02820 are separated by 29 nucleotides RR42_RS02805: RR42_RS02805 - metal-dependent hydrolase, at 624,696 to 625,580 _RS02805 RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329 _RS02810 RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925 _RS02815 RR42_RS02820: RR42_RS02820 - glycyl-tRNA synthetase subunit beta, at 626,955 to 629,087 _RS02820 Position (kb) 626 627Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 625.375 kb on + strand, within RR42_RS02805at 625.781 kb on + strand, within RR42_RS02810at 625.782 kb on - strand, within RR42_RS02810at 625.828 kb on - strand, within RR42_RS02810at 626.061 kb on + strand, within RR42_RS02810at 626.956 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
625,375 + RR42_RS02805 0.77 -0.3
625,781 + RR42_RS02810 0.27 +3.4
625,782 - RR42_RS02810 0.27 +2.9
625,828 - RR42_RS02810 0.33 +5.8
626,061 + RR42_RS02810 0.64 +3.9
626,956 + +3.0

Or see this region's nucleotide sequence