Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02730 and RR42_RS02735 are separated by 240 nucleotides RR42_RS02735 and RR42_RS02740 overlap by 20 nucleotides RR42_RS02740 and RR42_RS02745 overlap by 4 nucleotides
RR42_RS02730: RR42_RS02730 - tRNA-dihydrouridine synthase B, at 607,895 to 608,989
_RS02730
RR42_RS02735: RR42_RS02735 - hypothetical protein, at 609,230 to 610,477
_RS02735
RR42_RS02740: RR42_RS02740 - hypothetical protein, at 610,458 to 610,967
_RS02740
RR42_RS02745: RR42_RS02745 - Xaa-Pro aminopeptidase, at 610,964 to 612,346
_RS02745
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1
2 at 608.257 kb on - strand, within RR42_RS02730 at 608.428 kb on - strand, within RR42_RS02730 at 608.446 kb on - strand, within RR42_RS02730 at 609.013 kb on - strand at 609.013 kb on - strand at 609.050 kb on - strand at 609.050 kb on - strand at 609.166 kb on + strand at 610.868 kb on - strand, within RR42_RS02740 at 610.944 kb on + strand at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.131 kb on - strand, within RR42_RS02745 at 611.275 kb on - strand, within RR42_RS02745 at 611.318 kb on - strand, within RR42_RS02745 at 611.401 kb on - strand, within RR42_RS02745 at 611.401 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745 at 611.461 kb on - strand, within RR42_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 608,257 - RR42_RS02730 0.33 -0.1 608,428 - RR42_RS02730 0.49 -2.6 608,446 - RR42_RS02730 0.50 +0.6 609,013 - -0.9 609,013 - -1.3 609,050 - +0.6 609,050 - +1.1 609,166 + +0.9 610,868 - RR42_RS02740 0.80 -0.5 610,944 + +2.1 611,131 - RR42_RS02745 0.12 +1.9 611,131 - RR42_RS02745 0.12 -2.6 611,131 - RR42_RS02745 0.12 +1.5 611,131 - RR42_RS02745 0.12 +1.7 611,131 - RR42_RS02745 0.12 -1.0 611,275 - RR42_RS02745 0.22 +1.8 611,318 - RR42_RS02745 0.26 +0.7 611,401 - RR42_RS02745 0.32 +0.3 611,401 - RR42_RS02745 0.32 -1.2 611,461 - RR42_RS02745 0.36 +2.6 611,461 - RR42_RS02745 0.36 -0.0 611,461 - RR42_RS02745 0.36 +0.2 611,461 - RR42_RS02745 0.36 +0.1
Or see this region's nucleotide sequence