Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02585 and RR42_RS02590 overlap by 4 nucleotides RR42_RS02590 and RR42_RS02595 are separated by 145 nucleotides RR42_RS02595 and RR42_RS02600 are separated by 130 nucleotides
RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540
_RS02585
RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271
_RS02590
RR42_RS02595: RR42_RS02595 - glutamine amidotransferase, at 582,417 to 583,247
_RS02595
RR42_RS02600: RR42_RS02600 - tartrate dehydrogenase, at 583,378 to 584,466
_RS02600
Position (kb) 582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 581.475 kb on + strand at 581.476 kb on - strand at 581.476 kb on - strand at 581.483 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.568 kb on - strand at 581.568 kb on - strand at 581.894 kb on + strand, within RR42_RS02590 at 581.895 kb on - strand, within RR42_RS02590 at 582.361 kb on + strand at 582.361 kb on + strand at 582.361 kb on + strand at 582.361 kb on + strand at 582.361 kb on + strand at 582.361 kb on + strand at 582.362 kb on - strand at 582.362 kb on - strand at 582.362 kb on - strand at 582.362 kb on - strand at 582.362 kb on - strand at 582.673 kb on + strand, within RR42_RS02595 at 582.673 kb on + strand, within RR42_RS02595 at 582.673 kb on + strand, within RR42_RS02595 at 582.673 kb on + strand, within RR42_RS02595 at 582.673 kb on + strand, within RR42_RS02595 at 582.674 kb on - strand, within RR42_RS02595 at 582.674 kb on - strand, within RR42_RS02595 at 582.674 kb on - strand, within RR42_RS02595 at 582.674 kb on - strand, within RR42_RS02595 at 582.677 kb on - strand, within RR42_RS02595 at 582.727 kb on + strand, within RR42_RS02595 at 582.727 kb on + strand, within RR42_RS02595 at 582.727 kb on + strand, within RR42_RS02595 at 582.728 kb on - strand, within RR42_RS02595 at 582.728 kb on - strand, within RR42_RS02595 at 582.883 kb on + strand, within RR42_RS02595 at 582.883 kb on + strand, within RR42_RS02595 at 582.883 kb on + strand, within RR42_RS02595 at 582.884 kb on - strand, within RR42_RS02595 at 583.016 kb on + strand, within RR42_RS02595 at 583.286 kb on + strand at 583.287 kb on - strand at 583.387 kb on + strand at 583.388 kb on - strand at 583.388 kb on - strand at 583.522 kb on + strand, within RR42_RS02600 at 583.522 kb on + strand, within RR42_RS02600 at 583.525 kb on + strand, within RR42_RS02600 at 583.525 kb on + strand, within RR42_RS02600 at 583.525 kb on + strand, within RR42_RS02600 at 583.526 kb on - strand, within RR42_RS02600 at 583.579 kb on + strand, within RR42_RS02600 at 583.591 kb on + strand, within RR42_RS02600 at 583.591 kb on + strand, within RR42_RS02600 at 583.591 kb on + strand, within RR42_RS02600 at 583.632 kb on + strand, within RR42_RS02600 at 583.632 kb on + strand, within RR42_RS02600 at 583.632 kb on + strand, within RR42_RS02600 at 583.632 kb on + strand, within RR42_RS02600 at 583.632 kb on + strand, within RR42_RS02600 at 583.632 kb on + strand, within RR42_RS02600 at 583.633 kb on - strand, within RR42_RS02600 at 583.681 kb on + strand, within RR42_RS02600 at 583.681 kb on + strand, within RR42_RS02600 at 583.681 kb on + strand, within RR42_RS02600 at 583.682 kb on - strand, within RR42_RS02600 at 583.777 kb on + strand, within RR42_RS02600 at 583.778 kb on - strand, within RR42_RS02600 at 583.778 kb on - strand, within RR42_RS02600 at 583.782 kb on - strand, within RR42_RS02600 at 583.990 kb on + strand, within RR42_RS02600 at 584.050 kb on + strand, within RR42_RS02600 at 584.051 kb on - strand, within RR42_RS02600 at 584.193 kb on + strand, within RR42_RS02600 at 584.193 kb on + strand, within RR42_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 581,475 + +0.7 581,476 - +3.0 581,476 - +2.7 581,483 + +2.0 581,536 + +2.0 581,536 + +2.1 581,536 + +1.1 581,568 - +3.3 581,568 - +2.4 581,894 + RR42_RS02590 0.49 +2.9 581,895 - RR42_RS02590 0.49 +2.3 582,361 + +0.2 582,361 + -1.7 582,361 + -0.3 582,361 + -1.3 582,361 + +0.3 582,361 + -0.3 582,362 - +0.2 582,362 - -0.3 582,362 - +0.6 582,362 - +0.2 582,362 - +1.2 582,673 + RR42_RS02595 0.31 -0.3 582,673 + RR42_RS02595 0.31 -1.7 582,673 + RR42_RS02595 0.31 +1.5 582,673 + RR42_RS02595 0.31 -0.5 582,673 + RR42_RS02595 0.31 -1.3 582,674 - RR42_RS02595 0.31 -0.1 582,674 - RR42_RS02595 0.31 +0.6 582,674 - RR42_RS02595 0.31 +1.6 582,674 - RR42_RS02595 0.31 +0.8 582,677 - RR42_RS02595 0.31 -0.1 582,727 + RR42_RS02595 0.37 -0.4 582,727 + RR42_RS02595 0.37 -0.4 582,727 + RR42_RS02595 0.37 -1.3 582,728 - RR42_RS02595 0.37 -0.3 582,728 - RR42_RS02595 0.37 -0.2 582,883 + RR42_RS02595 0.56 -0.1 582,883 + RR42_RS02595 0.56 +0.0 582,883 + RR42_RS02595 0.56 +0.8 582,884 - RR42_RS02595 0.56 -1.5 583,016 + RR42_RS02595 0.72 -0.7 583,286 + -0.3 583,287 - -1.0 583,387 + +0.7 583,388 - +0.1 583,388 - +0.5 583,522 + RR42_RS02600 0.13 +1.8 583,522 + RR42_RS02600 0.13 +0.4 583,525 + RR42_RS02600 0.13 +0.7 583,525 + RR42_RS02600 0.13 +0.3 583,525 + RR42_RS02600 0.13 -2.0 583,526 - RR42_RS02600 0.14 +0.3 583,579 + RR42_RS02600 0.18 -3.4 583,591 + RR42_RS02600 0.20 +0.3 583,591 + RR42_RS02600 0.20 +0.7 583,591 + RR42_RS02600 0.20 -0.7 583,632 + RR42_RS02600 0.23 -0.6 583,632 + RR42_RS02600 0.23 +2.2 583,632 + RR42_RS02600 0.23 -0.9 583,632 + RR42_RS02600 0.23 +0.5 583,632 + RR42_RS02600 0.23 +1.3 583,632 + RR42_RS02600 0.23 -0.4 583,633 - RR42_RS02600 0.23 +0.4 583,681 + RR42_RS02600 0.28 -0.4 583,681 + RR42_RS02600 0.28 +0.0 583,681 + RR42_RS02600 0.28 +0.5 583,682 - RR42_RS02600 0.28 +0.7 583,777 + RR42_RS02600 0.37 +0.3 583,778 - RR42_RS02600 0.37 +1.8 583,778 - RR42_RS02600 0.37 +0.3 583,782 - RR42_RS02600 0.37 +0.2 583,990 + RR42_RS02600 0.56 +0.4 584,050 + RR42_RS02600 0.62 +1.6 584,051 - RR42_RS02600 0.62 +0.0 584,193 + RR42_RS02600 0.75 -1.3 584,193 + RR42_RS02600 0.75 -1.0
Or see this region's nucleotide sequence