Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02570 and RR42_RS02575 are separated by 364 nucleotides RR42_RS02575 and RR42_RS02580 are separated by 63 nucleotides RR42_RS02580 and RR42_RS02585 are separated by 11 nucleotides
RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789
_RS02570
RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053
_RS02575
RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845
_RS02580
RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540
_RS02585
Position (kb) 579
580
581 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 578.283 kb on + strand, within RR42_RS02570 at 578.283 kb on + strand, within RR42_RS02570 at 578.322 kb on + strand, within RR42_RS02570 at 578.322 kb on + strand, within RR42_RS02570 at 578.322 kb on + strand, within RR42_RS02570 at 578.323 kb on - strand, within RR42_RS02570 at 578.323 kb on - strand, within RR42_RS02570 at 578.323 kb on - strand, within RR42_RS02570 at 578.535 kb on - strand, within RR42_RS02570 at 578.586 kb on + strand, within RR42_RS02570 at 578.599 kb on + strand, within RR42_RS02570 at 578.600 kb on - strand, within RR42_RS02570 at 578.712 kb on - strand at 578.850 kb on + strand at 578.901 kb on + strand at 578.901 kb on + strand at 578.902 kb on - strand at 579.091 kb on - strand at 579.091 kb on - strand at 579.091 kb on - strand at 579.153 kb on + strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.343 kb on + strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.844 kb on + strand, within RR42_RS02575 at 579.845 kb on - strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 580.054 kb on + strand at 580.055 kb on - strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.142 kb on + strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.174 kb on + strand at 580.174 kb on + strand at 580.175 kb on - strand at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.332 kb on + strand, within RR42_RS02580 at 580.333 kb on - strand, within RR42_RS02580 at 580.335 kb on + strand, within RR42_RS02580 at 580.570 kb on + strand, within RR42_RS02580 at 580.571 kb on - strand, within RR42_RS02580 at 580.576 kb on + strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.715 kb on - strand, within RR42_RS02580 at 580.729 kb on + strand, within RR42_RS02580 at 580.759 kb on + strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.843 kb on + strand at 580.843 kb on + strand at 580.843 kb on + strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 578,283 + RR42_RS02570 0.61 -0.4 578,283 + RR42_RS02570 0.61 +0.3 578,322 + RR42_RS02570 0.64 -0.2 578,322 + RR42_RS02570 0.64 +0.3 578,322 + RR42_RS02570 0.64 -1.2 578,323 - RR42_RS02570 0.64 -2.0 578,323 - RR42_RS02570 0.64 -0.9 578,323 - RR42_RS02570 0.64 -1.7 578,535 - RR42_RS02570 0.81 -3.0 578,586 + RR42_RS02570 0.84 -1.9 578,599 + RR42_RS02570 0.85 -1.4 578,600 - RR42_RS02570 0.85 -1.4 578,712 - +0.0 578,850 + -4.3 578,901 + -2.4 578,901 + -2.2 578,902 - +1.0 579,091 - -0.7 579,091 - +2.4 579,091 - +3.5 579,153 + +2.6 579,154 - +3.8 579,154 - +3.9 579,154 - +2.7 579,271 - RR42_RS02575 0.13 +0.7 579,271 - RR42_RS02575 0.13 +0.6 579,271 - RR42_RS02575 0.13 +2.8 579,307 + RR42_RS02575 0.17 +2.2 579,307 + RR42_RS02575 0.17 +2.8 579,308 - RR42_RS02575 0.17 +2.6 579,308 - RR42_RS02575 0.17 +3.2 579,343 + RR42_RS02575 0.21 +2.9 579,344 - RR42_RS02575 0.21 +2.2 579,344 - RR42_RS02575 0.21 +2.0 579,844 + RR42_RS02575 0.77 +0.8 579,845 - RR42_RS02575 0.77 +1.2 579,940 + RR42_RS02575 0.87 +3.1 579,940 + RR42_RS02575 0.87 +1.7 579,940 + RR42_RS02575 0.87 +1.7 580,054 + +1.7 580,055 - +3.1 580,123 + +3.0 580,123 + +2.3 580,123 + +3.2 580,124 - +2.8 580,124 - +1.9 580,124 - +1.8 580,142 + +2.6 580,143 - +2.0 580,143 - +3.2 580,143 - +2.4 580,174 + +2.4 580,174 + +2.0 580,175 - +1.6 580,316 - RR42_RS02580 0.27 +4.2 580,316 - RR42_RS02580 0.27 +3.0 580,316 - RR42_RS02580 0.27 +2.3 580,332 + RR42_RS02580 0.29 +3.8 580,333 - RR42_RS02580 0.30 +2.6 580,335 + RR42_RS02580 0.30 +2.9 580,570 + RR42_RS02580 0.62 +2.2 580,571 - RR42_RS02580 0.62 +2.8 580,576 + RR42_RS02580 0.63 +1.9 580,577 - RR42_RS02580 0.63 +2.3 580,577 - RR42_RS02580 0.63 +1.6 580,583 + RR42_RS02580 0.64 +3.0 580,583 + RR42_RS02580 0.64 +3.0 580,714 + RR42_RS02580 0.82 +1.3 580,714 + RR42_RS02580 0.82 +2.3 580,715 - RR42_RS02580 0.82 +2.5 580,729 + RR42_RS02580 0.84 +3.7 580,759 + RR42_RS02580 0.88 +4.2 580,760 - RR42_RS02580 0.88 +2.8 580,760 - RR42_RS02580 0.88 +2.5 580,760 - RR42_RS02580 0.88 +2.8 580,843 + -1.1 580,843 + +0.5 580,843 + -0.3 580,844 - +3.0 580,844 - +2.5 580,844 - +2.0 580,863 + +3.5 580,863 + +2.3 580,863 + +0.7 580,863 + +3.6 580,864 - +2.2 580,864 - +3.9 580,864 - +3.4 580,864 - +2.7 580,864 - +2.1 580,865 + +0.3 580,865 + +2.7 580,865 + -0.1 580,865 + +2.7 580,865 + +2.7 580,865 + +3.0 580,866 - +2.5 580,866 - -0.7 580,866 - +3.3 580,866 - +2.5 580,866 - +2.3 580,866 - +2.5 580,866 - +2.6 580,866 - +3.2 581,037 + RR42_RS02585 0.26 +2.5 581,037 + RR42_RS02585 0.26 +2.9 581,037 + RR42_RS02585 0.26 +2.4 581,038 - RR42_RS02585 0.26 +2.7 581,038 - RR42_RS02585 0.26 +0.9
Or see this region's nucleotide sequence