Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02390 and RR42_RS02395 are separated by 52 nucleotides RR42_RS02395 and RR42_RS02400 are separated by 42 nucleotides RR42_RS02400 and RR42_RS02405 are separated by 76 nucleotides
RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086
_RS02390
RR42_RS02395: RR42_RS02395 - hypothetical protein, at 540,139 to 540,552
_RS02395
RR42_RS02400: RR42_RS02400 - ubiquinone biosynthesis methyltransferase UbiE, at 540,595 to 541,326
_RS02400
RR42_RS02405: RR42_RS02405 - membrane protein, at 541,403 to 542,404
_RS02405
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.634 kb on + strand, within RR42_RS02390 at 539.901 kb on + strand at 539.902 kb on - strand at 540.084 kb on + strand at 540.253 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.402 kb on + strand, within RR42_RS02395 at 540.412 kb on + strand, within RR42_RS02395 at 540.470 kb on - strand, within RR42_RS02395 at 541.332 kb on + strand at 541.335 kb on - strand at 541.378 kb on + strand at 541.633 kb on + strand, within RR42_RS02405 at 541.634 kb on - strand, within RR42_RS02405 at 542.078 kb on + strand, within RR42_RS02405 at 542.078 kb on + strand, within RR42_RS02405 at 542.078 kb on + strand, within RR42_RS02405 at 542.078 kb on + strand, within RR42_RS02405 at 542.079 kb on - strand, within RR42_RS02405 at 542.081 kb on + strand, within RR42_RS02405 at 542.081 kb on + strand, within RR42_RS02405 at 542.081 kb on + strand, within RR42_RS02405 at 542.081 kb on + strand, within RR42_RS02405 at 542.082 kb on - strand, within RR42_RS02405 at 542.082 kb on - strand, within RR42_RS02405 at 542.082 kb on - strand, within RR42_RS02405 at 542.085 kb on + strand, within RR42_RS02405 at 542.085 kb on + strand, within RR42_RS02405 at 542.086 kb on - strand, within RR42_RS02405 at 542.086 kb on - strand, within RR42_RS02405
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 539,634 + RR42_RS02390 0.76 -0.1 539,901 + -1.4 539,902 - -1.4 540,084 + +0.7 540,253 + RR42_RS02395 0.28 -0.3 540,367 + RR42_RS02395 0.55 -3.7 540,367 + RR42_RS02395 0.55 -0.3 540,367 + RR42_RS02395 0.55 -0.2 540,367 + RR42_RS02395 0.55 -1.2 540,402 + RR42_RS02395 0.64 -1.7 540,412 + RR42_RS02395 0.66 -0.0 540,470 - RR42_RS02395 0.80 +1.1 541,332 + +0.4 541,335 - +0.6 541,378 + +1.0 541,633 + RR42_RS02405 0.23 +2.4 541,634 - RR42_RS02405 0.23 +0.1 542,078 + RR42_RS02405 0.67 +1.6 542,078 + RR42_RS02405 0.67 +1.4 542,078 + RR42_RS02405 0.67 +0.9 542,078 + RR42_RS02405 0.67 -1.1 542,079 - RR42_RS02405 0.67 -1.0 542,081 + RR42_RS02405 0.68 +0.5 542,081 + RR42_RS02405 0.68 -1.0 542,081 + RR42_RS02405 0.68 -0.0 542,081 + RR42_RS02405 0.68 +0.4 542,082 - RR42_RS02405 0.68 +0.8 542,082 - RR42_RS02405 0.68 +0.4 542,082 - RR42_RS02405 0.68 +2.5 542,085 + RR42_RS02405 0.68 +0.4 542,085 + RR42_RS02405 0.68 +0.3 542,086 - RR42_RS02405 0.68 +0.9 542,086 - RR42_RS02405 0.68 -3.3
Or see this region's nucleotide sequence