Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01640 and RR42_RS01645 are separated by 87 nucleotides RR42_RS01645 and RR42_RS01650 are separated by 102 nucleotides
RR42_RS01640: RR42_RS01640 - ABC transporter permease, at 373,831 to 374,907
_RS01640
RR42_RS01645: RR42_RS01645 - ABC transporter permease, at 374,995 to 376,329
_RS01645
RR42_RS01650: RR42_RS01650 - branched-chain amino acid ABC transporter ATP-binding protein, at 376,432 to 377,247
_RS01650
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.031 kb on + strand, within RR42_RS01640 at 374.032 kb on - strand, within RR42_RS01640 at 374.105 kb on - strand, within RR42_RS01640 at 374.152 kb on - strand, within RR42_RS01640 at 374.224 kb on + strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.570 kb on - strand, within RR42_RS01640 at 374.582 kb on - strand, within RR42_RS01640 at 375.027 kb on - strand at 375.115 kb on + strand at 375.131 kb on - strand, within RR42_RS01645 at 375.172 kb on + strand, within RR42_RS01645 at 375.247 kb on + strand, within RR42_RS01645 at 375.248 kb on - strand, within RR42_RS01645 at 375.274 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.547 kb on + strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.697 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.933 kb on + strand, within RR42_RS01645 at 375.934 kb on - strand, within RR42_RS01645 at 375.967 kb on + strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 375.968 kb on - strand, within RR42_RS01645 at 376.030 kb on + strand, within RR42_RS01645 at 376.031 kb on - strand, within RR42_RS01645 at 376.456 kb on - strand at 376.468 kb on + strand at 376.468 kb on + strand at 376.469 kb on - strand at 376.469 kb on - strand at 376.760 kb on - strand, within RR42_RS01650 at 376.760 kb on - strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.761 kb on + strand, within RR42_RS01650 at 376.811 kb on - strand, within RR42_RS01650 at 377.060 kb on - strand, within RR42_RS01650 at 377.074 kb on + strand, within RR42_RS01650 at 377.075 kb on - strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.152 kb on + strand, within RR42_RS01650 at 377.153 kb on - strand, within RR42_RS01650 at 377.218 kb on + strand at 377.218 kb on + strand at 377.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 374,031 + RR42_RS01640 0.19 +0.9 374,032 - RR42_RS01640 0.19 -0.6 374,105 - RR42_RS01640 0.25 -0.7 374,152 - RR42_RS01640 0.30 +1.1 374,224 + RR42_RS01640 0.36 -2.2 374,375 - RR42_RS01640 0.51 -0.7 374,375 - RR42_RS01640 0.51 -1.6 374,570 - RR42_RS01640 0.69 +0.2 374,582 - RR42_RS01640 0.70 -2.3 375,027 - +0.2 375,115 + +2.6 375,131 - RR42_RS01645 0.10 +0.4 375,172 + RR42_RS01645 0.13 -0.9 375,247 + RR42_RS01645 0.19 +0.4 375,248 - RR42_RS01645 0.19 -0.2 375,274 + RR42_RS01645 0.21 +0.3 375,541 + RR42_RS01645 0.41 -2.7 375,541 + RR42_RS01645 0.41 +0.4 375,541 + RR42_RS01645 0.41 +2.4 375,547 + RR42_RS01645 0.41 +0.4 375,563 - RR42_RS01645 0.43 -0.9 375,563 - RR42_RS01645 0.43 +1.8 375,697 + RR42_RS01645 0.53 -0.6 375,844 + RR42_RS01645 0.64 -1.6 375,844 + RR42_RS01645 0.64 -2.2 375,844 + RR42_RS01645 0.64 -1.2 375,844 + RR42_RS01645 0.64 +0.5 375,844 + RR42_RS01645 0.64 +0.1 375,845 - RR42_RS01645 0.64 -0.1 375,845 - RR42_RS01645 0.64 -0.7 375,846 + RR42_RS01645 0.64 +0.4 375,846 + RR42_RS01645 0.64 +0.3 375,933 + RR42_RS01645 0.70 +0.1 375,934 - RR42_RS01645 0.70 -1.1 375,967 + RR42_RS01645 0.73 +1.9 375,968 - RR42_RS01645 0.73 +0.6 375,968 - RR42_RS01645 0.73 -0.9 376,030 + RR42_RS01645 0.78 +0.4 376,031 - RR42_RS01645 0.78 -0.1 376,456 - -0.4 376,468 + +0.7 376,468 + -1.3 376,469 - -1.0 376,469 - -0.0 376,760 - RR42_RS01650 0.40 +0.7 376,760 - RR42_RS01650 0.40 -1.0 376,761 + RR42_RS01650 0.40 -2.6 376,761 + RR42_RS01650 0.40 +0.6 376,761 + RR42_RS01650 0.40 -1.1 376,811 - RR42_RS01650 0.46 +1.1 377,060 - RR42_RS01650 0.77 +0.3 377,074 + RR42_RS01650 0.79 -2.4 377,075 - RR42_RS01650 0.79 +0.3 377,152 + RR42_RS01650 0.88 -0.2 377,152 + RR42_RS01650 0.88 -0.5 377,153 - RR42_RS01650 0.88 +1.1 377,218 + -2.4 377,218 + -0.6 377,218 + -1.3
Or see this region's nucleotide sequence