Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01495 and RR42_RS01500 are separated by 322 nucleotides RR42_RS01500 and RR42_RS01505 are separated by 149 nucleotides RR42_RS01505 and RR42_RS01510 are separated by 258 nucleotides
RR42_RS01495: RR42_RS01495 - diguanylate cyclase, at 337,571 to 339,352
_RS01495
RR42_RS01500: RR42_RS01500 - hypothetical protein, at 339,675 to 340,094
_RS01500
RR42_RS01505: RR42_RS01505 - tRNA-Cys, at 340,244 to 340,318
_RS01505
RR42_RS01510: RR42_RS01510 - N-acetylglutamate synthase, at 340,577 to 341,020
_RS01510
Position (kb) 339
340
341 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 338.820 kb on + strand, within RR42_RS01495 at 338.858 kb on + strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.150 kb on + strand, within RR42_RS01495 at 339.275 kb on + strand at 339.275 kb on + strand at 339.275 kb on + strand at 339.336 kb on + strand at 339.337 kb on - strand at 339.337 kb on - strand at 339.340 kb on + strand at 339.341 kb on - strand at 339.482 kb on + strand at 339.482 kb on + strand at 339.482 kb on + strand at 339.519 kb on + strand at 339.562 kb on + strand at 339.563 kb on - strand at 339.633 kb on + strand at 339.642 kb on + strand at 339.912 kb on + strand, within RR42_RS01500 at 339.912 kb on + strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 340.161 kb on + strand at 340.162 kb on - strand at 340.162 kb on - strand at 340.285 kb on + strand, within RR42_RS01505 at 340.321 kb on - strand at 340.321 kb on - strand at 340.422 kb on - strand at 340.509 kb on + strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.570 kb on - strand at 340.696 kb on + strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.780 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 338,820 + RR42_RS01495 0.70 -0.1 338,858 + RR42_RS01495 0.72 +2.7 339,131 - RR42_RS01495 0.88 -2.5 339,131 - RR42_RS01495 0.88 -3.1 339,131 - RR42_RS01495 0.88 -0.1 339,131 - RR42_RS01495 0.88 +0.2 339,150 + RR42_RS01495 0.89 +0.1 339,275 + -0.1 339,275 + +0.6 339,275 + -0.9 339,336 + -3.9 339,337 - -0.9 339,337 - -0.9 339,340 + +0.1 339,341 - +0.2 339,482 + +0.1 339,482 + +1.0 339,482 + +1.8 339,519 + +0.1 339,562 + -0.4 339,563 - +1.5 339,633 + +1.8 339,642 + -1.6 339,912 + RR42_RS01500 0.56 -0.8 339,912 + RR42_RS01500 0.56 -0.8 339,913 - RR42_RS01500 0.57 +0.9 339,913 - RR42_RS01500 0.57 +0.1 340,161 + +1.0 340,162 - +0.5 340,162 - +0.1 340,285 + RR42_RS01505 0.55 +1.3 340,321 - -1.2 340,321 - -1.3 340,422 - -0.1 340,509 + -2.2 340,510 - +0.5 340,510 - -0.1 340,510 - -0.2 340,570 - +0.1 340,696 + RR42_RS01510 0.27 +0.0 340,697 - RR42_RS01510 0.27 +1.4 340,697 - RR42_RS01510 0.27 -2.4 340,697 - RR42_RS01510 0.27 +2.4 340,780 - RR42_RS01510 0.46 +1.0 340,817 - RR42_RS01510 0.54 +1.1 340,817 - RR42_RS01510 0.54 +0.5 340,896 - RR42_RS01510 0.72 -0.0 340,896 - RR42_RS01510 0.72 +0.2
Or see this region's nucleotide sequence