Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01480 and RR42_RS01485 are separated by 43 nucleotides RR42_RS01485 and RR42_RS01490 are separated by 42 nucleotides RR42_RS01490 and RR42_RS01495 are separated by 17 nucleotides
RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668
_RS01480
RR42_RS01485: RR42_RS01485 - phosphonate transporter, at 335,712 to 336,077
_RS01485
RR42_RS01490: RR42_RS01490 - histidine kinase, at 336,120 to 337,553
_RS01490
RR42_RS01495: RR42_RS01495 - diguanylate cyclase, at 337,571 to 339,352
_RS01495
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.232 kb on + strand, within RR42_RS01480 at 335.232 kb on + strand, within RR42_RS01480 at 335.233 kb on - strand, within RR42_RS01480 at 335.307 kb on - strand, within RR42_RS01480 at 335.434 kb on + strand, within RR42_RS01480 at 335.435 kb on - strand, within RR42_RS01480 at 335.435 kb on - strand, within RR42_RS01480 at 335.436 kb on + strand, within RR42_RS01480 at 335.437 kb on - strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.620 kb on + strand at 335.620 kb on + strand at 335.620 kb on + strand at 335.620 kb on + strand at 335.620 kb on + strand at 335.621 kb on - strand at 335.621 kb on - strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.731 kb on + strand at 335.732 kb on - strand at 335.806 kb on + strand, within RR42_RS01485 at 335.806 kb on + strand, within RR42_RS01485 at 335.807 kb on - strand, within RR42_RS01485 at 336.122 kb on - strand at 336.404 kb on + strand, within RR42_RS01490 at 336.405 kb on - strand, within RR42_RS01490 at 336.405 kb on - strand, within RR42_RS01490 at 336.405 kb on - strand, within RR42_RS01490 at 336.606 kb on + strand, within RR42_RS01490 at 336.606 kb on + strand, within RR42_RS01490 at 336.607 kb on - strand, within RR42_RS01490 at 336.607 kb on - strand, within RR42_RS01490 at 337.084 kb on + strand, within RR42_RS01490 at 337.084 kb on + strand, within RR42_RS01490 at 337.084 kb on + strand, within RR42_RS01490 at 337.170 kb on - strand, within RR42_RS01490 at 337.242 kb on + strand, within RR42_RS01490 at 337.255 kb on + strand, within RR42_RS01490 at 337.255 kb on + strand, within RR42_RS01490 at 337.256 kb on - strand, within RR42_RS01490 at 337.357 kb on + strand, within RR42_RS01490 at 337.358 kb on - strand, within RR42_RS01490 at 337.380 kb on + strand, within RR42_RS01490 at 337.381 kb on - strand, within RR42_RS01490 at 337.524 kb on + strand at 337.524 kb on + strand at 337.525 kb on - strand at 338.096 kb on + strand, within RR42_RS01495 at 338.097 kb on - strand, within RR42_RS01495 at 338.097 kb on - strand, within RR42_RS01495 at 338.100 kb on + strand, within RR42_RS01495 at 338.100 kb on + strand, within RR42_RS01495 at 338.100 kb on + strand, within RR42_RS01495 at 338.101 kb on - strand, within RR42_RS01495 at 338.410 kb on - strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.439 kb on + strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495 at 338.440 kb on - strand, within RR42_RS01495
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 335,232 + RR42_RS01480 0.65 +0.7 335,232 + RR42_RS01480 0.65 -1.4 335,233 - RR42_RS01480 0.66 +0.3 335,307 - RR42_RS01480 0.71 -1.8 335,434 + RR42_RS01480 0.81 -0.3 335,435 - RR42_RS01480 0.82 +0.2 335,435 - RR42_RS01480 0.82 +1.7 335,436 + RR42_RS01480 0.82 +0.4 335,437 - RR42_RS01480 0.82 +0.9 335,474 + RR42_RS01480 0.85 -2.3 335,474 + RR42_RS01480 0.85 +1.1 335,474 + RR42_RS01480 0.85 +0.6 335,474 + RR42_RS01480 0.85 +1.5 335,620 + -2.6 335,620 + -0.4 335,620 + -1.1 335,620 + -0.4 335,620 + +1.4 335,621 - +0.8 335,621 - +0.7 335,622 + +0.1 335,622 + +0.5 335,622 + +0.3 335,622 + -1.1 335,622 + +0.8 335,622 + -0.6 335,622 + -2.4 335,623 - -2.3 335,623 - -1.4 335,623 - +0.6 335,623 - +0.9 335,623 - +0.6 335,623 - -1.7 335,623 - +0.9 335,623 - -2.5 335,731 + +1.0 335,732 - +0.2 335,806 + RR42_RS01485 0.26 -1.7 335,806 + RR42_RS01485 0.26 -2.5 335,807 - RR42_RS01485 0.26 +0.2 336,122 - +0.3 336,404 + RR42_RS01490 0.20 +1.1 336,405 - RR42_RS01490 0.20 +0.4 336,405 - RR42_RS01490 0.20 +2.1 336,405 - RR42_RS01490 0.20 -1.1 336,606 + RR42_RS01490 0.34 -0.2 336,606 + RR42_RS01490 0.34 +0.2 336,607 - RR42_RS01490 0.34 -0.7 336,607 - RR42_RS01490 0.34 -1.6 337,084 + RR42_RS01490 0.67 +0.3 337,084 + RR42_RS01490 0.67 -0.9 337,084 + RR42_RS01490 0.67 -0.2 337,170 - RR42_RS01490 0.73 -1.4 337,242 + RR42_RS01490 0.78 +0.4 337,255 + RR42_RS01490 0.79 +0.3 337,255 + RR42_RS01490 0.79 -1.0 337,256 - RR42_RS01490 0.79 +0.8 337,357 + RR42_RS01490 0.86 +0.1 337,358 - RR42_RS01490 0.86 +1.4 337,380 + RR42_RS01490 0.88 +1.9 337,381 - RR42_RS01490 0.88 +0.6 337,524 + -1.2 337,524 + +0.8 337,525 - -0.9 338,096 + RR42_RS01495 0.29 +0.3 338,097 - RR42_RS01495 0.30 -0.6 338,097 - RR42_RS01495 0.30 -0.2 338,100 + RR42_RS01495 0.30 +2.2 338,100 + RR42_RS01495 0.30 -1.3 338,100 + RR42_RS01495 0.30 +1.6 338,101 - RR42_RS01495 0.30 -2.0 338,410 - RR42_RS01495 0.47 +0.3 338,439 + RR42_RS01495 0.49 +1.0 338,439 + RR42_RS01495 0.49 +0.9 338,439 + RR42_RS01495 0.49 +0.3 338,439 + RR42_RS01495 0.49 +1.1 338,440 - RR42_RS01495 0.49 +0.8 338,440 - RR42_RS01495 0.49 +1.0 338,440 - RR42_RS01495 0.49 +0.9 338,440 - RR42_RS01495 0.49 +0.4
Or see this region's nucleotide sequence