Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01430 and RR42_RS01435 are separated by 96 nucleotides RR42_RS01435 and RR42_RS01440 are separated by 69 nucleotides RR42_RS01440 and RR42_RS01445 are separated by 155 nucleotides
RR42_RS01430: RR42_RS01430 - hypothetical protein, at 322,380 to 323,579
_RS01430
RR42_RS01435: RR42_RS01435 - short-chain dehydrogenase, at 323,676 to 324,422
_RS01435
RR42_RS01440: RR42_RS01440 - diguanylate cyclase, at 324,492 to 324,905
_RS01440
RR42_RS01445: RR42_RS01445 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 325,061 to 326,002
_RS01445
Position (kb) 324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 323.590 kb on + strand at 323.590 kb on + strand at 323.590 kb on + strand at 323.987 kb on + strand, within RR42_RS01435 at 323.993 kb on + strand, within RR42_RS01435 at 323.993 kb on + strand, within RR42_RS01435 at 324.321 kb on + strand, within RR42_RS01435 at 324.903 kb on + strand at 324.904 kb on - strand at 325.106 kb on + strand at 325.106 kb on + strand at 325.107 kb on - strand at 325.107 kb on - strand at 325.107 kb on - strand at 325.202 kb on + strand, within RR42_RS01445 at 325.202 kb on + strand, within RR42_RS01445 at 325.202 kb on + strand, within RR42_RS01445 at 325.203 kb on - strand, within RR42_RS01445 at 325.203 kb on - strand, within RR42_RS01445 at 325.203 kb on - strand, within RR42_RS01445 at 325.203 kb on - strand, within RR42_RS01445 at 325.203 kb on - strand, within RR42_RS01445 at 325.343 kb on + strand, within RR42_RS01445 at 325.343 kb on + strand, within RR42_RS01445 at 325.343 kb on + strand, within RR42_RS01445 at 325.343 kb on + strand, within RR42_RS01445 at 325.343 kb on + strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.344 kb on - strand, within RR42_RS01445 at 325.368 kb on - strand, within RR42_RS01445 at 325.368 kb on - strand, within RR42_RS01445 at 325.445 kb on + strand, within RR42_RS01445 at 325.446 kb on - strand, within RR42_RS01445 at 325.446 kb on - strand, within RR42_RS01445 at 325.613 kb on + strand, within RR42_RS01445 at 325.641 kb on - strand, within RR42_RS01445 at 325.768 kb on + strand, within RR42_RS01445 at 325.768 kb on + strand, within RR42_RS01445 at 325.768 kb on + strand, within RR42_RS01445 at 325.768 kb on + strand, within RR42_RS01445 at 325.769 kb on - strand, within RR42_RS01445
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 323,590 + +0.9 323,590 + +0.0 323,590 + +0.6 323,987 + RR42_RS01435 0.42 -2.3 323,993 + RR42_RS01435 0.42 +2.7 323,993 + RR42_RS01435 0.42 +0.2 324,321 + RR42_RS01435 0.86 -1.0 324,903 + -0.1 324,904 - +0.7 325,106 + +0.5 325,106 + +2.9 325,107 - -1.6 325,107 - -0.2 325,107 - -1.1 325,202 + RR42_RS01445 0.15 -1.6 325,202 + RR42_RS01445 0.15 +1.3 325,202 + RR42_RS01445 0.15 -1.2 325,203 - RR42_RS01445 0.15 -1.6 325,203 - RR42_RS01445 0.15 +0.4 325,203 - RR42_RS01445 0.15 -1.8 325,203 - RR42_RS01445 0.15 +0.5 325,203 - RR42_RS01445 0.15 +0.2 325,343 + RR42_RS01445 0.30 +0.3 325,343 + RR42_RS01445 0.30 +0.5 325,343 + RR42_RS01445 0.30 -0.4 325,343 + RR42_RS01445 0.30 -2.8 325,343 + RR42_RS01445 0.30 +0.5 325,344 - RR42_RS01445 0.30 -0.9 325,344 - RR42_RS01445 0.30 +0.5 325,344 - RR42_RS01445 0.30 +0.3 325,344 - RR42_RS01445 0.30 +0.2 325,344 - RR42_RS01445 0.30 -2.8 325,344 - RR42_RS01445 0.30 +2.3 325,344 - RR42_RS01445 0.30 +1.1 325,344 - RR42_RS01445 0.30 -0.2 325,368 - RR42_RS01445 0.33 -0.2 325,368 - RR42_RS01445 0.33 -1.8 325,445 + RR42_RS01445 0.41 +0.1 325,446 - RR42_RS01445 0.41 -0.2 325,446 - RR42_RS01445 0.41 -0.0 325,613 + RR42_RS01445 0.59 +1.0 325,641 - RR42_RS01445 0.62 +0.7 325,768 + RR42_RS01445 0.75 -0.8 325,768 + RR42_RS01445 0.75 +1.1 325,768 + RR42_RS01445 0.75 +0.7 325,768 + RR42_RS01445 0.75 +0.4 325,769 - RR42_RS01445 0.75 -1.4
Or see this region's nucleotide sequence