Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01175 and RR42_RS01180 are separated by 100 nucleotides RR42_RS01180 and RR42_RS01185 are separated by 157 nucleotides
RR42_RS01175: RR42_RS01175 - membrane protein, at 269,239 to 270,183
_RS01175
RR42_RS01180: RR42_RS01180 - acyl-CoA thioesterase, at 270,284 to 271,114
_RS01180
RR42_RS01185: RR42_RS01185 - muropeptide transporter, at 271,272 to 272,528
_RS01185
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 269.523 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.567 kb on - strand, within RR42_RS01175 at 269.596 kb on + strand, within RR42_RS01175 at 269.785 kb on + strand, within RR42_RS01175 at 269.956 kb on - strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 270.034 kb on + strand, within RR42_RS01175 at 270.387 kb on - strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.945 kb on - strand, within RR42_RS01180 at 271.103 kb on + strand at 271.103 kb on + strand at 271.103 kb on + strand at 271.103 kb on + strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.112 kb on + strand at 271.112 kb on + strand at 271.112 kb on + strand at 271.113 kb on - strand at 271.113 kb on - strand at 271.113 kb on - strand at 271.171 kb on - strand at 271.171 kb on - strand at 271.233 kb on - strand at 271.273 kb on + strand at 271.300 kb on + strand at 271.330 kb on - strand at 271.339 kb on - strand at 271.372 kb on + strand at 271.373 kb on - strand at 271.426 kb on + strand, within RR42_RS01185 at 271.427 kb on - strand, within RR42_RS01185 at 271.427 kb on - strand, within RR42_RS01185 at 271.610 kb on - strand, within RR42_RS01185 at 271.660 kb on + strand, within RR42_RS01185 at 271.660 kb on + strand, within RR42_RS01185 at 271.826 kb on - strand, within RR42_RS01185 at 271.996 kb on + strand, within RR42_RS01185 at 271.997 kb on - strand, within RR42_RS01185 at 271.997 kb on - strand, within RR42_RS01185
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 269,523 + RR42_RS01175 0.30 -2.1 269,566 + RR42_RS01175 0.35 +2.2 269,566 + RR42_RS01175 0.35 -0.4 269,566 + RR42_RS01175 0.35 +1.2 269,567 - RR42_RS01175 0.35 +0.6 269,596 + RR42_RS01175 0.38 +0.6 269,785 + RR42_RS01175 0.58 +1.1 269,956 - RR42_RS01175 0.76 +1.5 269,968 + RR42_RS01175 0.77 -0.4 269,968 + RR42_RS01175 0.77 -1.6 269,968 + RR42_RS01175 0.77 -3.0 269,968 + RR42_RS01175 0.77 +0.8 269,969 - RR42_RS01175 0.77 +2.1 269,969 - RR42_RS01175 0.77 -0.1 269,969 - RR42_RS01175 0.77 -0.5 269,969 - RR42_RS01175 0.77 -0.6 269,980 + RR42_RS01175 0.78 +0.6 269,980 + RR42_RS01175 0.78 -0.9 269,980 + RR42_RS01175 0.78 +1.4 269,980 + RR42_RS01175 0.78 -3.3 269,981 - RR42_RS01175 0.79 -0.6 269,981 - RR42_RS01175 0.79 +1.0 269,981 - RR42_RS01175 0.79 +0.0 269,981 - RR42_RS01175 0.79 +0.2 270,034 + RR42_RS01175 0.84 +0.9 270,387 - RR42_RS01180 0.12 +0.9 270,737 + RR42_RS01180 0.55 -0.3 270,737 + RR42_RS01180 0.55 -2.3 270,737 + RR42_RS01180 0.55 -1.4 270,944 + RR42_RS01180 0.79 +0.2 270,944 + RR42_RS01180 0.79 -0.2 270,944 + RR42_RS01180 0.79 +1.2 270,944 + RR42_RS01180 0.79 -1.2 270,945 - RR42_RS01180 0.80 -2.2 271,103 + -0.2 271,103 + +0.2 271,103 + -0.0 271,103 + -0.2 271,104 - +1.9 271,104 - -1.2 271,104 - -2.3 271,104 - +0.5 271,104 - -1.6 271,112 + -0.6 271,112 + -1.1 271,112 + -1.5 271,113 - -1.6 271,113 - -1.3 271,113 - -1.2 271,171 - +0.4 271,171 - +0.1 271,233 - +1.6 271,273 + -2.5 271,300 + +0.6 271,330 - +1.1 271,339 - +0.1 271,372 + +1.5 271,373 - +1.4 271,426 + RR42_RS01185 0.12 +1.7 271,427 - RR42_RS01185 0.12 +1.5 271,427 - RR42_RS01185 0.12 +1.5 271,610 - RR42_RS01185 0.27 +0.8 271,660 + RR42_RS01185 0.31 +1.0 271,660 + RR42_RS01185 0.31 +1.6 271,826 - RR42_RS01185 0.44 +1.0 271,996 + RR42_RS01185 0.58 +0.0 271,997 - RR42_RS01185 0.58 +1.3 271,997 - RR42_RS01185 0.58 +0.9
Or see this region's nucleotide sequence