Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00725

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00720 and RR42_RS00725 are separated by 69 nucleotidesRR42_RS00725 and RR42_RS00730 are separated by 69 nucleotides RR42_RS00720: RR42_RS00720 - patatin, at 181,827 to 183,068 _RS00720 RR42_RS00725: RR42_RS00725 - hypothetical protein, at 183,138 to 184,046 _RS00725 RR42_RS00730: RR42_RS00730 - enoyl-CoA hydratase, at 184,116 to 184,934 _RS00730 Position (kb) 183 184 185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 182.584 kb on + strand, within RR42_RS00720at 182.585 kb on - strand, within RR42_RS00720at 182.585 kb on - strand, within RR42_RS00720at 182.610 kb on - strand, within RR42_RS00720at 182.610 kb on - strand, within RR42_RS00720at 182.612 kb on - strand, within RR42_RS00720at 182.612 kb on - strand, within RR42_RS00720at 182.612 kb on - strand, within RR42_RS00720at 183.006 kb on + strandat 183.007 kb on - strandat 183.159 kb on - strandat 183.450 kb on - strand, within RR42_RS00725at 183.657 kb on - strand, within RR42_RS00725at 183.657 kb on - strand, within RR42_RS00725at 183.706 kb on + strand, within RR42_RS00725at 183.706 kb on + strand, within RR42_RS00725at 183.707 kb on - strand, within RR42_RS00725at 184.108 kb on + strandat 184.108 kb on + strandat 184.109 kb on - strandat 184.109 kb on - strandat 184.109 kb on - strandat 184.109 kb on - strandat 184.155 kb on + strandat 184.156 kb on - strandat 184.244 kb on + strand, within RR42_RS00730at 184.245 kb on - strand, within RR42_RS00730at 184.255 kb on + strand, within RR42_RS00730at 184.255 kb on + strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.487 kb on + strand, within RR42_RS00730at 184.487 kb on + strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.618 kb on + strand, within RR42_RS00730at 184.618 kb on + strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.799 kb on + strand, within RR42_RS00730at 184.799 kb on + strand, within RR42_RS00730at 184.800 kb on - strand, within RR42_RS00730

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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182,584 + RR42_RS00720 0.61 -2.0
182,585 - RR42_RS00720 0.61 -2.6
182,585 - RR42_RS00720 0.61 +1.0
182,610 - RR42_RS00720 0.63 +1.3
182,610 - RR42_RS00720 0.63 +1.3
182,612 - RR42_RS00720 0.63 -1.4
182,612 - RR42_RS00720 0.63 +1.2
182,612 - RR42_RS00720 0.63 -2.5
183,006 + +0.4
183,007 - -0.2
183,159 - -0.8
183,450 - RR42_RS00725 0.34 -1.6
183,657 - RR42_RS00725 0.57 +0.5
183,657 - RR42_RS00725 0.57 +0.5
183,706 + RR42_RS00725 0.62 -1.4
183,706 + RR42_RS00725 0.62 +0.8
183,707 - RR42_RS00725 0.63 +0.2
184,108 + +0.2
184,108 + +1.4
184,109 - +0.2
184,109 - -2.3
184,109 - +1.0
184,109 - -2.1
184,155 + -1.1
184,156 - -1.2
184,244 + RR42_RS00730 0.16 +1.2
184,245 - RR42_RS00730 0.16 +0.6
184,255 + RR42_RS00730 0.17 -2.3
184,255 + RR42_RS00730 0.17 +0.7
184,256 - RR42_RS00730 0.17 -0.6
184,256 - RR42_RS00730 0.17 -1.7
184,256 - RR42_RS00730 0.17 +0.1
184,408 + RR42_RS00730 0.36 +0.2
184,408 + RR42_RS00730 0.36 +1.6
184,408 + RR42_RS00730 0.36 +1.2
184,409 - RR42_RS00730 0.36 +1.0
184,409 - RR42_RS00730 0.36 +1.1
184,409 - RR42_RS00730 0.36 +0.4
184,409 - RR42_RS00730 0.36 +0.8
184,411 + RR42_RS00730 0.36 -2.0
184,411 + RR42_RS00730 0.36 -0.9
184,411 + RR42_RS00730 0.36 +0.7
184,411 + RR42_RS00730 0.36 +0.1
184,411 + RR42_RS00730 0.36 -0.6
184,411 + RR42_RS00730 0.36 -0.3
184,411 + RR42_RS00730 0.36 -0.0
184,411 + RR42_RS00730 0.36 -3.8
184,412 - RR42_RS00730 0.36 -2.4
184,412 - RR42_RS00730 0.36 -1.6
184,412 - RR42_RS00730 0.36 -1.0
184,487 + RR42_RS00730 0.45 +1.2
184,487 + RR42_RS00730 0.45 -0.6
184,530 - RR42_RS00730 0.51 -0.8
184,530 - RR42_RS00730 0.51 -0.2
184,530 - RR42_RS00730 0.51 -1.1
184,618 + RR42_RS00730 0.61 +0.1
184,618 + RR42_RS00730 0.61 -1.6
184,619 - RR42_RS00730 0.61 +0.6
184,619 - RR42_RS00730 0.61 +0.3
184,619 - RR42_RS00730 0.61 -1.9
184,799 + RR42_RS00730 0.83 -3.5
184,799 + RR42_RS00730 0.83 +0.3
184,800 - RR42_RS00730 0.84 +3.0

Or see this region's nucleotide sequence