Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00205

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00200 and RR42_RS00205 overlap by 4 nucleotidesRR42_RS00205 and RR42_RS00210 overlap by 4 nucleotidesRR42_RS00210 and RR42_RS00215 are separated by 12 nucleotides RR42_RS00200: RR42_RS00200 - ABC transporter permease, at 65,299 to 66,429 _RS00200 RR42_RS00205: RR42_RS00205 - branched-chain amino acid ABC transporter ATP-binding protein, at 66,426 to 67,211 _RS00205 RR42_RS00210: RR42_RS00210 - ABC transporter ATP-binding protein, at 67,208 to 67,933 _RS00210 RR42_RS00215: RR42_RS00215 - branched-chain amino acid ABC transporter ATP-binding protein, at 67,946 to 69,235 _RS00215 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 65.524 kb on + strand, within RR42_RS00200at 65.569 kb on + strand, within RR42_RS00200at 65.569 kb on + strand, within RR42_RS00200at 65.656 kb on - strand, within RR42_RS00200at 65.656 kb on - strand, within RR42_RS00200at 65.659 kb on + strand, within RR42_RS00200at 65.660 kb on - strand, within RR42_RS00200at 65.660 kb on - strand, within RR42_RS00200at 65.785 kb on + strand, within RR42_RS00200at 65.786 kb on - strand, within RR42_RS00200at 65.900 kb on - strand, within RR42_RS00200at 65.908 kb on - strand, within RR42_RS00200at 65.956 kb on + strand, within RR42_RS00200at 65.957 kb on - strand, within RR42_RS00200at 65.957 kb on - strand, within RR42_RS00200at 66.087 kb on + strand, within RR42_RS00200at 66.154 kb on + strand, within RR42_RS00200at 66.154 kb on + strand, within RR42_RS00200at 66.591 kb on + strand, within RR42_RS00205at 66.619 kb on - strand, within RR42_RS00205at 66.661 kb on - strand, within RR42_RS00205at 66.661 kb on - strand, within RR42_RS00205at 66.816 kb on + strand, within RR42_RS00205at 66.817 kb on - strand, within RR42_RS00205at 66.830 kb on - strand, within RR42_RS00205at 66.845 kb on + strand, within RR42_RS00205at 67.122 kb on + strand, within RR42_RS00205at 67.122 kb on + strand, within RR42_RS00205at 67.122 kb on + strand, within RR42_RS00205at 67.122 kb on + strand, within RR42_RS00205at 67.123 kb on - strand, within RR42_RS00205at 67.123 kb on - strand, within RR42_RS00205at 67.189 kb on - strandat 67.535 kb on + strand, within RR42_RS00210at 67.536 kb on - strand, within RR42_RS00210at 67.584 kb on - strand, within RR42_RS00210at 67.690 kb on + strand, within RR42_RS00210at 67.691 kb on - strand, within RR42_RS00210at 67.737 kb on - strand, within RR42_RS00210at 67.839 kb on - strand, within RR42_RS00210at 67.844 kb on + strand, within RR42_RS00210at 68.033 kb on + strandat 68.200 kb on + strand, within RR42_RS00215at 68.200 kb on + strand, within RR42_RS00215at 68.201 kb on - strand, within RR42_RS00215at 68.201 kb on - strand, within RR42_RS00215at 68.207 kb on + strand, within RR42_RS00215at 68.207 kb on + strand, within RR42_RS00215at 68.207 kb on + strand, within RR42_RS00215

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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65,524 + RR42_RS00200 0.20 +1.0
65,569 + RR42_RS00200 0.24 -1.9
65,569 + RR42_RS00200 0.24 +3.4
65,656 - RR42_RS00200 0.32 -0.5
65,656 - RR42_RS00200 0.32 +0.1
65,659 + RR42_RS00200 0.32 -0.4
65,660 - RR42_RS00200 0.32 -1.6
65,660 - RR42_RS00200 0.32 -1.7
65,785 + RR42_RS00200 0.43 +1.1
65,786 - RR42_RS00200 0.43 +0.1
65,900 - RR42_RS00200 0.53 -0.4
65,908 - RR42_RS00200 0.54 -0.7
65,956 + RR42_RS00200 0.58 -2.9
65,957 - RR42_RS00200 0.58 -1.3
65,957 - RR42_RS00200 0.58 -1.9
66,087 + RR42_RS00200 0.70 -1.4
66,154 + RR42_RS00200 0.76 -0.6
66,154 + RR42_RS00200 0.76 -2.3
66,591 + RR42_RS00205 0.21 -0.2
66,619 - RR42_RS00205 0.25 +1.0
66,661 - RR42_RS00205 0.30 +0.0
66,661 - RR42_RS00205 0.30 -0.6
66,816 + RR42_RS00205 0.50 -0.4
66,817 - RR42_RS00205 0.50 -1.1
66,830 - RR42_RS00205 0.51 -1.4
66,845 + RR42_RS00205 0.53 +0.8
67,122 + RR42_RS00205 0.89 -0.0
67,122 + RR42_RS00205 0.89 -0.6
67,122 + RR42_RS00205 0.89 -1.5
67,122 + RR42_RS00205 0.89 +2.0
67,123 - RR42_RS00205 0.89 -2.9
67,123 - RR42_RS00205 0.89 -2.0
67,189 - -0.9
67,535 + RR42_RS00210 0.45 -0.7
67,536 - RR42_RS00210 0.45 +2.2
67,584 - RR42_RS00210 0.52 +1.0
67,690 + RR42_RS00210 0.66 +0.6
67,691 - RR42_RS00210 0.67 +1.2
67,737 - RR42_RS00210 0.73 +0.1
67,839 - RR42_RS00210 0.87 +1.4
67,844 + RR42_RS00210 0.88 -2.1
68,033 + -2.7
68,200 + RR42_RS00215 0.20 +0.8
68,200 + RR42_RS00215 0.20 -0.0
68,201 - RR42_RS00215 0.20 +0.3
68,201 - RR42_RS00215 0.20 -1.1
68,207 + RR42_RS00215 0.20 -1.9
68,207 + RR42_RS00215 0.20 +2.4
68,207 + RR42_RS00215 0.20 -2.4

Or see this region's nucleotide sequence