Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19015

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19010 and RALBFv3_RS19015 are separated by 220 nucleotidesRALBFv3_RS19015 and RALBFv3_RS19020 are separated by 337 nucleotides RALBFv3_RS19010: RALBFv3_RS19010 - non-ribosomal peptide synthetase, at 827,085 to 833,306 _RS19010 RALBFv3_RS19015: RALBFv3_RS19015 - hypothetical protein, at 833,527 to 833,970 _RS19015 RALBFv3_RS19020: RALBFv3_RS19020 - AraC family transcriptional regulator, at 834,308 to 835,267 _RS19020 Position (kb) 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1at 832.575 kb on - strand, within RALBFv3_RS19010at 832.936 kb on + strandat 833.300 kb on + strandat 833.301 kb on - strandat 833.301 kb on - strandat 833.783 kb on + strand, within RALBFv3_RS19015at 833.783 kb on + strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 834.267 kb on - strandat 834.593 kb on + strand, within RALBFv3_RS19020at 834.594 kb on - strand, within RALBFv3_RS19020at 834.594 kb on - strand, within RALBFv3_RS19020at 834.966 kb on + strand, within RALBFv3_RS19020at 834.966 kb on + strand, within RALBFv3_RS19020at 834.967 kb on - strand, within RALBFv3_RS19020

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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832,575 - RALBFv3_RS19010 0.88 -1.6
832,936 + -0.5
833,300 + +1.1
833,301 - +0.5
833,301 - -0.2
833,783 + RALBFv3_RS19015 0.58 -2.1
833,783 + RALBFv3_RS19015 0.58 -0.9
833,784 - RALBFv3_RS19015 0.58 +0.2
833,784 - RALBFv3_RS19015 0.58 +0.2
833,784 - RALBFv3_RS19015 0.58 -1.3
833,784 - RALBFv3_RS19015 0.58 -1.6
834,267 - -0.8
834,593 + RALBFv3_RS19020 0.30 -2.9
834,594 - RALBFv3_RS19020 0.30 +1.2
834,594 - RALBFv3_RS19020 0.30 -0.5
834,966 + RALBFv3_RS19020 0.69 +0.5
834,966 + RALBFv3_RS19020 0.69 +0.5
834,967 - RALBFv3_RS19020 0.69 +0.3

Or see this region's nucleotide sequence