Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15440

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15435 and RALBFv3_RS15440 are separated by 209 nucleotidesRALBFv3_RS15440 and RALBFv3_RS15445 are separated by 55 nucleotides RALBFv3_RS15435: RALBFv3_RS15435 - hypothetical protein, at 3,358,269 to 3,359,321 _RS15435 RALBFv3_RS15440: RALBFv3_RS15440 - rhizopine-binding protein, at 3,359,531 to 3,360,448 _RS15440 RALBFv3_RS15445: RALBFv3_RS15445 - sugar ABC transporter ATP-binding protein, at 3,360,504 to 3,362,063 _RS15445 Position (kb) 3359 3360 3361Strain fitness (log2 ratio) -2 -1 0 1 2at 3358.588 kb on - strand, within RALBFv3_RS15435at 3358.774 kb on - strand, within RALBFv3_RS15435at 3358.887 kb on + strand, within RALBFv3_RS15435at 3359.850 kb on - strand, within RALBFv3_RS15440at 3360.425 kb on + strandat 3360.426 kb on - strandat 3360.426 kb on - strandat 3360.426 kb on - strandat 3360.447 kb on - strandat 3360.723 kb on + strand, within RALBFv3_RS15445at 3360.747 kb on + strand, within RALBFv3_RS15445at 3361.149 kb on + strand, within RALBFv3_RS15445at 3361.149 kb on + strand, within RALBFv3_RS15445at 3361.149 kb on + strand, within RALBFv3_RS15445at 3361.150 kb on - strand, within RALBFv3_RS15445at 3361.218 kb on + strand, within RALBFv3_RS15445

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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3,358,588 - RALBFv3_RS15435 0.30 +0.7
3,358,774 - RALBFv3_RS15435 0.48 -2.1
3,358,887 + RALBFv3_RS15435 0.59 -0.2
3,359,850 - RALBFv3_RS15440 0.35 -1.8
3,360,425 + -1.7
3,360,426 - -1.2
3,360,426 - +2.0
3,360,426 - +0.2
3,360,447 - -1.2
3,360,723 + RALBFv3_RS15445 0.14 +1.5
3,360,747 + RALBFv3_RS15445 0.16 +0.1
3,361,149 + RALBFv3_RS15445 0.41 +1.0
3,361,149 + RALBFv3_RS15445 0.41 +1.0
3,361,149 + RALBFv3_RS15445 0.41 -0.8
3,361,150 - RALBFv3_RS15445 0.41 +0.0
3,361,218 + RALBFv3_RS15445 0.46 +2.6

Or see this region's nucleotide sequence