Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS10255

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS10250 and RALBFv3_RS10255 are separated by 255 nucleotidesRALBFv3_RS10255 and RALBFv3_RS10260 are separated by 106 nucleotides RALBFv3_RS10250: RALBFv3_RS10250 - hypothetical protein, at 2,278,287 to 2,279,189 _RS10250 RALBFv3_RS10255: RALBFv3_RS10255 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 2,279,445 to 2,280,812 _RS10255 RALBFv3_RS10260: RALBFv3_RS10260 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 2,280,919 to 2,282,757 _RS10260 Position (kb) 2279 2280 2281Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2278.483 kb on + strand, within RALBFv3_RS10250at 2278.484 kb on - strand, within RALBFv3_RS10250at 2278.537 kb on + strand, within RALBFv3_RS10250at 2278.639 kb on + strand, within RALBFv3_RS10250at 2278.789 kb on + strand, within RALBFv3_RS10250at 2278.801 kb on + strand, within RALBFv3_RS10250at 2278.922 kb on - strand, within RALBFv3_RS10250at 2278.924 kb on + strand, within RALBFv3_RS10250at 2278.925 kb on - strand, within RALBFv3_RS10250at 2278.925 kb on - strand, within RALBFv3_RS10250at 2278.936 kb on + strand, within RALBFv3_RS10250at 2279.096 kb on - strand, within RALBFv3_RS10250at 2279.096 kb on - strand, within RALBFv3_RS10250at 2279.096 kb on - strand, within RALBFv3_RS10250at 2279.415 kb on - strandat 2279.432 kb on + strandat 2279.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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2,278,483 + RALBFv3_RS10250 0.22 -0.8
2,278,484 - RALBFv3_RS10250 0.22 +0.1
2,278,537 + RALBFv3_RS10250 0.28 +0.0
2,278,639 + RALBFv3_RS10250 0.39 +0.6
2,278,789 + RALBFv3_RS10250 0.56 -2.1
2,278,801 + RALBFv3_RS10250 0.57 +0.4
2,278,922 - RALBFv3_RS10250 0.70 -1.1
2,278,924 + RALBFv3_RS10250 0.71 +4.1
2,278,925 - RALBFv3_RS10250 0.71 -1.4
2,278,925 - RALBFv3_RS10250 0.71 -0.4
2,278,936 + RALBFv3_RS10250 0.72 -0.8
2,279,096 - RALBFv3_RS10250 0.90 +1.8
2,279,096 - RALBFv3_RS10250 0.90 +0.4
2,279,096 - RALBFv3_RS10250 0.90 -1.1
2,279,415 - -1.1
2,279,432 + +0.6
2,279,432 + -0.9

Or see this region's nucleotide sequence