Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS05835

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS05830 and RALBFv3_RS05835 are separated by 24 nucleotidesRALBFv3_RS05835 and RALBFv3_RS05840 are separated by 39 nucleotides RALBFv3_RS05830: RALBFv3_RS05830 - DNA polymerase III subunit delta, at 1,297,837 to 1,298,913 _RS05830 RALBFv3_RS05835: RALBFv3_RS05835 - hypothetical protein, at 1,298,938 to 1,299,447 _RS05835 RALBFv3_RS05840: RALBFv3_RS05840 - leucine--tRNA ligase, at 1,299,487 to 1,302,120 _RS05840 Position (kb) 1298 1299 1300Strain fitness (log2 ratio) -1 0 1 2 3 4at 1298.940 kb on - strandat 1299.057 kb on - strandat 1299.141 kb on - strand, within RALBFv3_RS05835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
remove
1,298,940 - -0.7
1,299,057 - +1.5
1,299,141 - RALBFv3_RS05835 0.40 +4.0

Or see this region's nucleotide sequence