Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04175 and RALBFv3_RS04180 are separated by 21 nucleotides RALBFv3_RS04180 and RALBFv3_RS04185 are separated by 15 nucleotides RALBFv3_RS04185 and RALBFv3_RS04190 are separated by 16 nucleotides
RALBFv3_RS04175: RALBFv3_RS04175 - trimeric intracellular cation channel family protein, at 931,537 to 932,160
_RS04175
RALBFv3_RS04180: RALBFv3_RS04180 - nitrogen regulatory protein P-II 1, at 932,182 to 932,520
_RS04180
RALBFv3_RS04185: RALBFv3_RS04185 - class I SAM-dependent methyltransferase, at 932,536 to 933,162
_RS04185
RALBFv3_RS04190: RALBFv3_RS04190 - NAD+ synthase, at 933,179 to 934,819
_RS04190
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 931.726 kb on + strand, within RALBFv3_RS04175 at 931.747 kb on + strand, within RALBFv3_RS04175 at 931.747 kb on + strand, within RALBFv3_RS04175 at 931.747 kb on + strand, within RALBFv3_RS04175 at 931.747 kb on + strand, within RALBFv3_RS04175 at 931.748 kb on - strand, within RALBFv3_RS04175 at 931.748 kb on - strand, within RALBFv3_RS04175 at 931.748 kb on - strand, within RALBFv3_RS04175 at 932.011 kb on + strand, within RALBFv3_RS04175 at 932.369 kb on + strand, within RALBFv3_RS04180 at 932.369 kb on + strand, within RALBFv3_RS04180 at 932.537 kb on + strand at 932.537 kb on + strand at 932.544 kb on + strand at 932.545 kb on - strand at 932.545 kb on - strand at 932.565 kb on - strand at 932.568 kb on - strand at 932.587 kb on + strand at 932.588 kb on - strand at 932.588 kb on - strand at 932.588 kb on - strand at 932.588 kb on - strand at 932.588 kb on - strand at 932.744 kb on + strand, within RALBFv3_RS04185 at 932.745 kb on - strand, within RALBFv3_RS04185 at 932.745 kb on - strand, within RALBFv3_RS04185 at 932.959 kb on - strand, within RALBFv3_RS04185 at 933.116 kb on + strand at 933.117 kb on - strand at 933.150 kb on - strand at 933.153 kb on - strand at 933.274 kb on - strand at 933.369 kb on + strand, within RALBFv3_RS04190 at 933.399 kb on + strand, within RALBFv3_RS04190 at 933.573 kb on + strand, within RALBFv3_RS04190 at 933.781 kb on - strand, within RALBFv3_RS04190 at 933.972 kb on + strand, within RALBFv3_RS04190 at 933.972 kb on + strand, within RALBFv3_RS04190 at 934.002 kb on + strand, within RALBFv3_RS04190 at 934.003 kb on - strand, within RALBFv3_RS04190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 931,726 + RALBFv3_RS04175 0.30 -1.9 931,747 + RALBFv3_RS04175 0.34 -0.1 931,747 + RALBFv3_RS04175 0.34 +1.7 931,747 + RALBFv3_RS04175 0.34 -0.3 931,747 + RALBFv3_RS04175 0.34 -1.5 931,748 - RALBFv3_RS04175 0.34 -1.3 931,748 - RALBFv3_RS04175 0.34 -1.4 931,748 - RALBFv3_RS04175 0.34 -1.3 932,011 + RALBFv3_RS04175 0.76 -0.9 932,369 + RALBFv3_RS04180 0.55 -1.5 932,369 + RALBFv3_RS04180 0.55 -3.5 932,537 + +1.0 932,537 + -2.0 932,544 + +0.3 932,545 - -0.7 932,545 - -1.2 932,565 - +0.6 932,568 - +1.5 932,587 + +0.2 932,588 - +2.3 932,588 - +0.2 932,588 - -0.3 932,588 - +0.0 932,588 - +0.1 932,744 + RALBFv3_RS04185 0.33 -0.4 932,745 - RALBFv3_RS04185 0.33 -0.3 932,745 - RALBFv3_RS04185 0.33 +0.3 932,959 - RALBFv3_RS04185 0.67 -0.6 933,116 + +0.2 933,117 - -0.1 933,150 - -0.2 933,153 - +0.0 933,274 - -1.5 933,369 + RALBFv3_RS04190 0.12 -0.5 933,399 + RALBFv3_RS04190 0.13 +1.5 933,573 + RALBFv3_RS04190 0.24 +0.3 933,781 - RALBFv3_RS04190 0.37 -1.8 933,972 + RALBFv3_RS04190 0.48 +0.0 933,972 + RALBFv3_RS04190 0.48 +1.8 934,002 + RALBFv3_RS04190 0.50 -0.2 934,003 - RALBFv3_RS04190 0.50 -1.2
Or see this region's nucleotide sequence