Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02035 and RALBFv3_RS02040 are separated by 39 nucleotides RALBFv3_RS02040 and RALBFv3_RS02045 are separated by 184 nucleotides RALBFv3_RS02045 and RALBFv3_RS02050 are separated by 594 nucleotides
RALBFv3_RS02035: RALBFv3_RS02035 - CBS domain-containing protein, at 456,798 to 457,268
_RS02035
RALBFv3_RS02040: RALBFv3_RS02040 - DUF2892 domain-containing protein, at 457,308 to 457,502
_RS02040
RALBFv3_RS02045: RALBFv3_RS02045 - universal stress protein, at 457,687 to 458,142
_RS02045
RALBFv3_RS02050: RALBFv3_RS02050 - GGDEF-domain containing protein, at 458,737 to 461,067
_RS02050
Position (kb) 457
458
459 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 456.732 kb on + strand at 456.733 kb on - strand at 456.778 kb on + strand at 456.778 kb on + strand at 456.778 kb on + strand at 456.779 kb on - strand at 456.779 kb on - strand at 456.779 kb on - strand at 457.461 kb on + strand, within RALBFv3_RS02040 at 457.462 kb on - strand, within RALBFv3_RS02040 at 457.628 kb on + strand at 457.629 kb on - strand at 457.691 kb on - strand at 457.691 kb on - strand at 457.691 kb on - strand at 458.278 kb on - strand at 458.278 kb on - strand at 458.278 kb on - strand at 458.461 kb on - strand at 458.851 kb on + strand at 458.851 kb on + strand at 458.852 kb on - strand at 458.852 kb on - strand at 459.110 kb on - strand, within RALBFv3_RS02050 at 459.111 kb on + strand, within RALBFv3_RS02050 at 459.112 kb on - strand, within RALBFv3_RS02050 at 459.121 kb on + strand, within RALBFv3_RS02050 at 459.122 kb on - strand, within RALBFv3_RS02050 at 459.122 kb on - strand, within RALBFv3_RS02050 at 459.122 kb on - strand, within RALBFv3_RS02050 at 459.133 kb on + strand, within RALBFv3_RS02050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 456,732 + -0.2 456,733 - +0.8 456,778 + -0.0 456,778 + -1.9 456,778 + -1.4 456,779 - +0.3 456,779 - +1.3 456,779 - -0.3 457,461 + RALBFv3_RS02040 0.78 -1.2 457,462 - RALBFv3_RS02040 0.79 -0.4 457,628 + -1.9 457,629 - -0.1 457,691 - -1.7 457,691 - +0.8 457,691 - +1.8 458,278 - -1.6 458,278 - +2.9 458,278 - -2.2 458,461 - -0.2 458,851 + -1.5 458,851 + +0.3 458,852 - +0.6 458,852 - +0.6 459,110 - RALBFv3_RS02050 0.16 +0.0 459,111 + RALBFv3_RS02050 0.16 +0.2 459,112 - RALBFv3_RS02050 0.16 -1.0 459,121 + RALBFv3_RS02050 0.16 +1.0 459,122 - RALBFv3_RS02050 0.17 -0.8 459,122 - RALBFv3_RS02050 0.17 -0.6 459,122 - RALBFv3_RS02050 0.17 -0.6 459,133 + RALBFv3_RS02050 0.17 -0.4
Or see this region's nucleotide sequence