Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21840

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21830 and HSERO_RS21835 are separated by 75 nucleotidesHSERO_RS21835 and HSERO_RS21840 overlap by 4 nucleotidesHSERO_RS21840 and HSERO_RS21845 are separated by 559 nucleotides HSERO_RS21830: HSERO_RS21830 - F0F1 ATP synthase subunit C, at 4,998,677 to 4,998,922 _RS21830 HSERO_RS21835: HSERO_RS21835 - ATP synthase subunit A, at 4,998,998 to 4,999,819 _RS21835 HSERO_RS21840: HSERO_RS21840 - F0F1-type ATP synthase subunit I, at 4,999,816 to 5,000,160 _RS21840 HSERO_RS21845: HSERO_RS21845 - transcription regulator protein, at 5,000,720 to 5,002,177 _RS21845 Position (kb) 4999 5000 5001Strain fitness (log2 ratio) -1 0 1 2 3at 4999.003 kb on - strandat 5000.269 kb on + strandat 5000.277 kb on - strandat 5000.291 kb on + strandat 5000.346 kb on - strandat 5000.377 kb on - strandat 5000.379 kb on + strandat 5000.412 kb on + strandat 5000.420 kb on - strandat 5000.449 kb on + strandat 5000.683 kb on + strandat 5000.696 kb on - strandat 5000.723 kb on + strandat 5000.860 kb on + strandat 5000.918 kb on - strand, within HSERO_RS21845at 5000.963 kb on + strand, within HSERO_RS21845at 5000.963 kb on + strand, within HSERO_RS21845

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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4,999,003 - +1.7
5,000,269 + -0.0
5,000,277 - +0.9
5,000,291 + +0.0
5,000,346 - -0.1
5,000,377 - +0.5
5,000,379 + +3.1
5,000,412 + +1.3
5,000,420 - -0.6
5,000,449 + +1.3
5,000,683 + -1.4
5,000,696 - -0.7
5,000,723 + -0.3
5,000,860 + -0.4
5,000,918 - HSERO_RS21845 0.14 +0.8
5,000,963 + HSERO_RS21845 0.17 +0.4
5,000,963 + HSERO_RS21845 0.17 -0.2

Or see this region's nucleotide sequence