Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21830

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21820 and HSERO_RS21825 are separated by 1 nucleotidesHSERO_RS21825 and HSERO_RS21830 are separated by 74 nucleotidesHSERO_RS21830 and HSERO_RS21835 are separated by 75 nucleotidesHSERO_RS21835 and HSERO_RS21840 overlap by 4 nucleotides HSERO_RS21820: HSERO_RS21820 - F0F1 ATP synthase subunit delta, at 4,997,597 to 4,998,130 _RS21820 HSERO_RS21825: HSERO_RS21825 - F0F1 ATP synthase subunit B, at 4,998,132 to 4,998,602 _RS21825 HSERO_RS21830: HSERO_RS21830 - F0F1 ATP synthase subunit C, at 4,998,677 to 4,998,922 _RS21830 HSERO_RS21835: HSERO_RS21835 - ATP synthase subunit A, at 4,998,998 to 4,999,819 _RS21835 HSERO_RS21840: HSERO_RS21840 - F0F1-type ATP synthase subunit I, at 4,999,816 to 5,000,160 _RS21840 Position (kb) 4998 4999Strain fitness (log2 ratio) -1 0 1at 4999.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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4,999,003 - +1.7

Or see this region's nucleotide sequence