Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20355

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
4,663,330	+				-1.7
4,663,342	+				-3.0
4,663,355	-				-0.2
4,663,355	-				+0.7
4,663,377	+				-3.3
4,663,475	+		HSERO_RS20350	0.14	+1.1
4,663,504	+		HSERO_RS20350	0.18	-5.0
4,663,505	-		HSERO_RS20350	0.18	-3.0
4,663,540	+		HSERO_RS20350	0.24	-3.8
4,663,715	+		HSERO_RS20350	0.51	-5.5
4,664,010	-				-3.0
4,664,032	-				-2.6
4,664,117	-				+0.4
4,664,253	+		HSERO_RS20355	0.15	-4.9
4,664,385	+		HSERO_RS20355	0.25	-2.4
4,664,656	-		HSERO_RS20355	0.47	+0.2
4,664,777	+		HSERO_RS20355	0.57	-5.2
4,664,939	-		HSERO_RS20355	0.70	+0.6
4,664,988	+		HSERO_RS20355	0.74	-3.7
4,664,996	-		HSERO_RS20355	0.74	-2.0
4,665,031	+		HSERO_RS20355	0.77	-3.6
4,665,057	+		HSERO_RS20355	0.79	-2.6
4,665,449	+		HSERO_RS20360	0.52	+2.1
4,665,542	+				-2.0
4,665,544	+				-2.8
4,665,544	+				-1.2
4,665,557	-				-0.4
4,665,821	+		HSERO_RS20365	0.28	-1.2
4,665,875	+		HSERO_RS20365	0.35	-1.2
4,665,894	+		HSERO_RS20365	0.37	-0.2
4,665,919	-		HSERO_RS20365	0.40	+0.0
4,665,926	-		HSERO_RS20365	0.41	+0.6