Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20135 and HSERO_RS20140 are separated by 3 nucleotides HSERO_RS20140 and HSERO_RS20145 are separated by 82 nucleotides HSERO_RS20145 and HSERO_RS20150 are separated by 56 nucleotides
HSERO_RS20135: HSERO_RS20135 - type VI secretion protein, at 4,623,141 to 4,624,133
_RS20135
HSERO_RS20140: HSERO_RS20140 - cell envelope biogenesis protein OmpA, at 4,624,137 to 4,624,940
_RS20140
HSERO_RS20145: HSERO_RS20145 - type VI secretion protein, at 4,625,023 to 4,626,150
_RS20145
HSERO_RS20150: HSERO_RS20150 - ATPase, at 4,626,207 to 4,628,876
_RS20150
Position (kb) 4625
4626
4627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4624.034 kb on + strand at 4624.201 kb on - strand at 4624.240 kb on + strand, within HSERO_RS20140 at 4624.248 kb on - strand, within HSERO_RS20140 at 4624.265 kb on + strand, within HSERO_RS20140 at 4624.273 kb on - strand, within HSERO_RS20140 at 4624.302 kb on + strand, within HSERO_RS20140 at 4624.330 kb on + strand, within HSERO_RS20140 at 4624.378 kb on - strand, within HSERO_RS20140 at 4624.429 kb on - strand, within HSERO_RS20140 at 4624.559 kb on - strand, within HSERO_RS20140 at 4624.593 kb on + strand, within HSERO_RS20140 at 4624.600 kb on + strand, within HSERO_RS20140 at 4624.796 kb on + strand, within HSERO_RS20140 at 4624.867 kb on + strand at 4624.867 kb on + strand at 4624.955 kb on - strand at 4625.050 kb on + strand at 4625.104 kb on - strand at 4625.227 kb on - strand, within HSERO_RS20145 at 4625.358 kb on - strand, within HSERO_RS20145 at 4625.376 kb on + strand, within HSERO_RS20145 at 4625.791 kb on - strand, within HSERO_RS20145 at 4625.791 kb on - strand, within HSERO_RS20145 at 4625.986 kb on + strand, within HSERO_RS20145 at 4626.035 kb on - strand, within HSERO_RS20145 at 4626.085 kb on - strand at 4626.207 kb on + strand at 4626.282 kb on - strand at 4626.378 kb on + strand at 4626.386 kb on - strand at 4626.517 kb on + strand, within HSERO_RS20150 at 4626.587 kb on + strand, within HSERO_RS20150 at 4626.635 kb on - strand, within HSERO_RS20150 at 4626.673 kb on - strand, within HSERO_RS20150 at 4626.768 kb on - strand, within HSERO_RS20150 at 4626.788 kb on + strand, within HSERO_RS20150 at 4626.817 kb on + strand, within HSERO_RS20150 at 4626.830 kb on - strand, within HSERO_RS20150 at 4626.870 kb on + strand, within HSERO_RS20150 at 4626.870 kb on + strand, within HSERO_RS20150 at 4626.878 kb on - strand, within HSERO_RS20150 at 4626.878 kb on - strand, within HSERO_RS20150 at 4626.919 kb on - strand, within HSERO_RS20150 at 4626.940 kb on + strand, within HSERO_RS20150 at 4626.948 kb on - strand, within HSERO_RS20150 at 4626.968 kb on - strand, within HSERO_RS20150 at 4627.015 kb on + strand at 4627.042 kb on - strand, within HSERO_RS20150 at 4627.122 kb on + strand, within HSERO_RS20150
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 4,624,034 + -0.9 4,624,201 - +0.5 4,624,240 + HSERO_RS20140 0.13 +1.5 4,624,248 - HSERO_RS20140 0.14 +0.3 4,624,265 + HSERO_RS20140 0.16 -0.1 4,624,273 - HSERO_RS20140 0.17 +1.0 4,624,302 + HSERO_RS20140 0.21 -0.1 4,624,330 + HSERO_RS20140 0.24 -0.4 4,624,378 - HSERO_RS20140 0.30 +0.8 4,624,429 - HSERO_RS20140 0.36 -0.2 4,624,559 - HSERO_RS20140 0.52 +0.2 4,624,593 + HSERO_RS20140 0.57 +0.2 4,624,600 + HSERO_RS20140 0.58 +0.5 4,624,796 + HSERO_RS20140 0.82 -0.5 4,624,867 + +0.3 4,624,867 + +0.3 4,624,955 - +1.2 4,625,050 + -0.0 4,625,104 - +0.2 4,625,227 - HSERO_RS20145 0.18 +0.0 4,625,358 - HSERO_RS20145 0.30 +1.1 4,625,376 + HSERO_RS20145 0.31 +0.1 4,625,791 - HSERO_RS20145 0.68 -1.7 4,625,791 - HSERO_RS20145 0.68 +1.3 4,625,986 + HSERO_RS20145 0.85 -2.2 4,626,035 - HSERO_RS20145 0.90 -0.2 4,626,085 - -0.8 4,626,207 + -0.7 4,626,282 - -0.7 4,626,378 + -0.6 4,626,386 - -0.2 4,626,517 + HSERO_RS20150 0.12 +0.2 4,626,587 + HSERO_RS20150 0.14 +0.4 4,626,635 - HSERO_RS20150 0.16 +0.4 4,626,673 - HSERO_RS20150 0.17 +2.1 4,626,768 - HSERO_RS20150 0.21 -0.0 4,626,788 + HSERO_RS20150 0.22 -0.7 4,626,817 + HSERO_RS20150 0.23 -1.5 4,626,830 - HSERO_RS20150 0.23 -0.0 4,626,870 + HSERO_RS20150 0.25 -0.0 4,626,870 + HSERO_RS20150 0.25 +0.0 4,626,878 - HSERO_RS20150 0.25 -0.5 4,626,878 - HSERO_RS20150 0.25 +0.4 4,626,919 - HSERO_RS20150 0.27 +0.2 4,626,940 + HSERO_RS20150 0.27 -0.1 4,626,948 - HSERO_RS20150 0.28 -0.4 4,626,968 - HSERO_RS20150 0.29 +0.4 4,627,015 + +0.3 4,627,042 - HSERO_RS20150 0.31 +0.2 4,627,122 + HSERO_RS20150 0.34 -0.1
Or see this region's nucleotide sequence