Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19940

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
4,576,016	-		HSERO_RS19935	0.89	-1.0
4,576,083	-				+0.1
4,576,185	-				+0.4
4,576,518	+				+0.4
4,576,518	+				+0.4
4,576,518	+				+0.7
4,576,518	+				+0.3
4,576,577	+				+0.2
4,576,652	-				-0.1
4,576,671	+				+0.3
4,576,676	+				-0.3
4,576,679	-				+0.6
4,576,928	+				-0.0
4,577,043	-				-0.7
4,577,087	-				+0.3
4,577,089	-				-1.1
4,577,352	+		HSERO_RS19940	0.29	+1.6
4,577,362	-		HSERO_RS19940	0.29	+1.5
4,577,441	-		HSERO_RS19940	0.36	-0.7
4,577,547	-		HSERO_RS19940	0.45	+0.9
4,577,585	-		HSERO_RS19940	0.48	+0.7
4,577,598	+		HSERO_RS19940	0.49	-1.6
4,577,598	+		HSERO_RS19940	0.49	+0.1
4,577,692	+		HSERO_RS19940	0.57	+1.8
4,577,747	+		HSERO_RS19940	0.62	-0.6
4,578,088	-				-0.2
4,578,421	+		HSERO_RS19945	0.18	+0.3
4,578,474	+		HSERO_RS19945	0.23	-0.1
4,578,474	+		HSERO_RS19945	0.23	-2.2
4,578,477	-		HSERO_RS19945	0.24	+0.9
4,578,482	-		HSERO_RS19945	0.24	+0.3
4,578,482	-		HSERO_RS19945	0.24	-0.5
4,578,528	+		HSERO_RS19945	0.29	-0.9
4,578,536	-		HSERO_RS19945	0.30	-1.1
4,578,802	-		HSERO_RS19945	0.58	+0.4
4,578,838	-		HSERO_RS19945	0.61	-0.1
4,578,855	-		HSERO_RS19945	0.63	+1.7
4,579,038	+				+0.2
4,579,038	+		HSERO_RS19945	0.82	+0.7