Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19920 and HSERO_RS19925 are separated by 19 nucleotides HSERO_RS19925 and HSERO_RS19930 are separated by 100 nucleotides HSERO_RS19930 and HSERO_RS19935 are separated by 52 nucleotides
HSERO_RS19920: HSERO_RS19920 - protocatechuate 3,4-dioxygenase subunit beta, at 4,572,141 to 4,572,833
_RS19920
HSERO_RS19925: HSERO_RS19925 - protocatechuate 3,4-dioxygenase, at 4,572,853 to 4,573,365
_RS19925
HSERO_RS19930: HSERO_RS19930 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,573,466 to 4,574,833
_RS19930
HSERO_RS19935: HSERO_RS19935 - hydrolase, at 4,574,886 to 4,576,148
_RS19935
Position (kb) 4573
4574
4575 Strain fitness (log2 ratio) -1
0
1 at 4572.614 kb on + strand, within HSERO_RS19920 at 4572.653 kb on - strand, within HSERO_RS19920 at 4572.680 kb on - strand, within HSERO_RS19920 at 4572.861 kb on + strand at 4572.869 kb on - strand at 4572.901 kb on + strand at 4573.191 kb on - strand, within HSERO_RS19925 at 4573.643 kb on - strand, within HSERO_RS19930 at 4573.733 kb on + strand, within HSERO_RS19930 at 4573.808 kb on + strand, within HSERO_RS19930 at 4574.142 kb on + strand, within HSERO_RS19930 at 4574.150 kb on - strand, within HSERO_RS19930 at 4574.358 kb on + strand, within HSERO_RS19930 at 4574.463 kb on - strand, within HSERO_RS19930 at 4574.474 kb on - strand, within HSERO_RS19930 at 4574.585 kb on + strand, within HSERO_RS19930 at 4574.998 kb on - strand at 4575.377 kb on + strand, within HSERO_RS19935 at 4575.443 kb on + strand, within HSERO_RS19935 at 4575.593 kb on + strand, within HSERO_RS19935 at 4575.666 kb on - strand, within HSERO_RS19935 at 4575.735 kb on - strand, within HSERO_RS19935
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 4,572,614 + HSERO_RS19920 0.68 -0.0 4,572,653 - HSERO_RS19920 0.74 +0.1 4,572,680 - HSERO_RS19920 0.78 +0.6 4,572,861 + -0.5 4,572,869 - +0.2 4,572,901 + -1.2 4,573,191 - HSERO_RS19925 0.66 -0.3 4,573,643 - HSERO_RS19930 0.13 +0.9 4,573,733 + HSERO_RS19930 0.20 +0.8 4,573,808 + HSERO_RS19930 0.25 +0.7 4,574,142 + HSERO_RS19930 0.49 +0.4 4,574,150 - HSERO_RS19930 0.50 +1.0 4,574,358 + HSERO_RS19930 0.65 +0.0 4,574,463 - HSERO_RS19930 0.73 -0.7 4,574,474 - HSERO_RS19930 0.74 +0.5 4,574,585 + HSERO_RS19930 0.82 -0.0 4,574,998 - +0.5 4,575,377 + HSERO_RS19935 0.39 +0.2 4,575,443 + HSERO_RS19935 0.44 +0.6 4,575,593 + HSERO_RS19935 0.56 +0.4 4,575,666 - HSERO_RS19935 0.62 +0.2 4,575,735 - HSERO_RS19935 0.67 +1.2
Or see this region's nucleotide sequence