Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19000 and HSERO_RS19005 are separated by 48 nucleotides HSERO_RS19005 and HSERO_RS19010 are separated by 135 nucleotides HSERO_RS19010 and HSERO_RS19015 are separated by 49 nucleotides
HSERO_RS19000: HSERO_RS19000 - twitching motility protein PilT, at 4,356,910 to 4,357,965
_RS19000
HSERO_RS19005: HSERO_RS19005 - glutathione peroxidase, at 4,358,014 to 4,358,499
_RS19005
HSERO_RS19010: HSERO_RS19010 - ketol-acid reductoisomerase, at 4,358,635 to 4,359,651
_RS19010
HSERO_RS19015: HSERO_RS19015 - Fis family transcriptional regulator, at 4,359,701 to 4,360,858
_RS19015
Position (kb) 4358
4359
4360 Strain fitness (log2 ratio) -2
-1
0
1 at 4357.930 kb on - strand at 4358.317 kb on - strand, within HSERO_RS19005 at 4358.319 kb on + strand, within HSERO_RS19005 at 4358.425 kb on + strand, within HSERO_RS19005 at 4358.443 kb on + strand, within HSERO_RS19005 at 4358.451 kb on - strand at 4358.796 kb on + strand, within HSERO_RS19010 at 4358.978 kb on + strand, within HSERO_RS19010 at 4359.449 kb on + strand, within HSERO_RS19010 at 4359.544 kb on - strand, within HSERO_RS19010 at 4359.716 kb on + strand at 4359.719 kb on - strand at 4359.737 kb on - strand at 4359.941 kb on + strand, within HSERO_RS19015 at 4359.941 kb on + strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.949 kb on - strand, within HSERO_RS19015 at 4359.979 kb on + strand, within HSERO_RS19015 at 4359.987 kb on + strand, within HSERO_RS19015 at 4359.995 kb on - strand, within HSERO_RS19015 at 4360.086 kb on + strand, within HSERO_RS19015 at 4360.173 kb on + strand, within HSERO_RS19015 at 4360.173 kb on - strand, within HSERO_RS19015 at 4360.176 kb on - strand, within HSERO_RS19015 at 4360.286 kb on + strand, within HSERO_RS19015 at 4360.300 kb on - strand, within HSERO_RS19015 at 4360.391 kb on + strand, within HSERO_RS19015 at 4360.409 kb on + strand, within HSERO_RS19015 at 4360.537 kb on + strand, within HSERO_RS19015 at 4360.547 kb on + strand, within HSERO_RS19015 at 4360.650 kb on + strand, within HSERO_RS19015
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 4,357,930 - -0.3 4,358,317 - HSERO_RS19005 0.62 -0.2 4,358,319 + HSERO_RS19005 0.63 -0.3 4,358,425 + HSERO_RS19005 0.85 -0.6 4,358,443 + HSERO_RS19005 0.88 +0.1 4,358,451 - -0.8 4,358,796 + HSERO_RS19010 0.16 -0.2 4,358,978 + HSERO_RS19010 0.34 -0.4 4,359,449 + HSERO_RS19010 0.80 +0.4 4,359,544 - HSERO_RS19010 0.89 +0.7 4,359,716 + +1.0 4,359,719 - -0.7 4,359,737 - -0.1 4,359,941 + HSERO_RS19015 0.21 +0.0 4,359,941 + HSERO_RS19015 0.21 +0.2 4,359,949 - HSERO_RS19015 0.21 -0.5 4,359,949 - HSERO_RS19015 0.21 +0.5 4,359,949 - HSERO_RS19015 0.21 -1.9 4,359,949 - HSERO_RS19015 0.21 -0.4 4,359,949 - HSERO_RS19015 0.21 -0.2 4,359,949 - HSERO_RS19015 0.21 +0.6 4,359,949 - HSERO_RS19015 0.21 +0.5 4,359,949 - HSERO_RS19015 0.21 +0.8 4,359,949 - HSERO_RS19015 0.21 -0.3 4,359,979 + HSERO_RS19015 0.24 +0.4 4,359,987 + HSERO_RS19015 0.25 -0.1 4,359,995 - HSERO_RS19015 0.25 -0.3 4,360,086 + HSERO_RS19015 0.33 +0.1 4,360,173 + HSERO_RS19015 0.41 +0.2 4,360,173 - HSERO_RS19015 0.41 -0.0 4,360,176 - HSERO_RS19015 0.41 +0.0 4,360,286 + HSERO_RS19015 0.51 +1.4 4,360,300 - HSERO_RS19015 0.52 -0.5 4,360,391 + HSERO_RS19015 0.60 -0.7 4,360,409 + HSERO_RS19015 0.61 -0.4 4,360,537 + HSERO_RS19015 0.72 -0.3 4,360,547 + HSERO_RS19015 0.73 -0.1 4,360,650 + HSERO_RS19015 0.82 -0.2
Or see this region's nucleotide sequence