Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17865

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
4,104,935	-				-0.4
4,104,937	+		HSERO_RS17860	0.16	-0.1
4,104,937	+		HSERO_RS17860	0.16	-0.5
4,104,988	+		HSERO_RS17860	0.23	-0.3
4,105,084	+		HSERO_RS17860	0.37	-0.7
4,105,120	+		HSERO_RS17860	0.43	-0.4
4,105,120	-		HSERO_RS17860	0.43	+0.2
4,105,121	-		HSERO_RS17860	0.43	-1.2
4,105,257	-		HSERO_RS17860	0.63	+0.1
4,105,257	-		HSERO_RS17860	0.63	-0.3
4,105,257	-		HSERO_RS17860	0.63	-0.4
4,105,257	-		HSERO_RS17860	0.63	+0.6
4,105,329	+		HSERO_RS17860	0.73	-0.3
4,105,419	-		HSERO_RS17860	0.86	-0.9
4,105,434	-		HSERO_RS17860	0.89	-0.2
4,105,693	+				+0.6
4,105,797	+				+0.6
4,105,836	-				+0.3
4,105,878	-				+0.2
4,105,892	-				+1.0
4,106,157	-		HSERO_RS17865	0.19	+0.8
4,106,201	+		HSERO_RS17865	0.21	+2.1
4,106,257	+		HSERO_RS17865	0.24	+2.1
4,106,400	+		HSERO_RS17865	0.32	-1.3
4,106,752	-		HSERO_RS17865	0.52	+0.5
4,106,884	-		HSERO_RS17865	0.59	+0.9
4,107,100	-		HSERO_RS17865	0.71	+0.9
4,107,181	-		HSERO_RS17865	0.75	+1.4
4,107,181	-		HSERO_RS17865	0.75	+0.3
4,107,204	-		HSERO_RS17865	0.77	+0.4
4,107,324	+		HSERO_RS17865	0.83	-0.3
4,107,352	-		HSERO_RS17865	0.85	+0.7
4,107,665	+				-0.1
4,107,689	-				+0.5
4,107,756	+				-0.3
4,107,895	-		HSERO_RS17870	0.13	-0.3
4,107,910	-		HSERO_RS17870	0.14	+0.8
4,107,939	-		HSERO_RS17870	0.17	+1.2
4,107,979	-		HSERO_RS17870	0.21	+0.4
4,107,992	-		HSERO_RS17870	0.23	+0.2
4,108,003	-				+2.6
4,108,113	+		HSERO_RS17870	0.35	+0.4
4,108,121	-		HSERO_RS17870	0.35	+0.9
4,108,145	+		HSERO_RS17870	0.38	+1.5
4,108,395	-		HSERO_RS17870	0.63	-0.6
4,108,437	+		HSERO_RS17870	0.67	+1.0
4,108,521	+		HSERO_RS17870	0.75	+0.2
4,108,534	-		HSERO_RS17870	0.77	+0.3