Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15415

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,527,506	+		HSERO_RS15410	0.50	-1.5
3,527,739	+				+0.3
3,527,757	-				+0.1
3,527,896	+				+0.5
3,528,236	-				+0.0
3,528,291	+				-0.4
3,528,299	-				+0.4
3,528,384	-				+0.1
3,528,465	-				+0.4
3,528,487	-				+0.2
3,528,511	+				-0.2
3,528,583	-		HSERO_RS15415	0.10	+0.4
3,528,625	+		HSERO_RS15415	0.13	+0.1
3,528,766	+		HSERO_RS15415	0.22	+1.8
3,528,858	+		HSERO_RS15415	0.28	+0.6
3,528,921	+		HSERO_RS15415	0.32	+0.1
3,529,008	+				+0.2
3,529,028	+		HSERO_RS15415	0.39	+0.6
3,529,241	-		HSERO_RS15415	0.53	+1.3
3,529,476	+		HSERO_RS15415	0.68	-1.1
3,529,628	-		HSERO_RS15415	0.78	+0.3
3,529,628	-		HSERO_RS15415	0.78	-0.9
3,529,633	-		HSERO_RS15415	0.78	-0.4
3,529,633	-		HSERO_RS15415	0.78	+0.0
3,529,814	-				-0.2
3,529,964	+				-0.7
3,530,282	-		HSERO_RS15420	0.34	-0.5
3,530,282	-		HSERO_RS15420	0.34	+0.4
3,530,282	-		HSERO_RS15420	0.34	-1.4
3,530,466	-		HSERO_RS15420	0.66	-0.3
3,530,472	-		HSERO_RS15420	0.67	-1.3
3,530,604	+		HSERO_RS15420	0.89	-0.0
3,530,614	+				-0.1