Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09005

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,034,134	-				+0.1
2,034,241	-				+1.9
2,034,290	+				-0.2
2,034,293	+				+0.1
2,034,529	+		HSERO_RS09000	0.37	+0.3
2,034,563	-		HSERO_RS09000	0.41	-0.2
2,034,743	+		HSERO_RS09000	0.64	+0.1
2,034,880	-		HSERO_RS09000	0.82	+0.2
2,034,998	+				+0.1
2,035,208	+		HSERO_RS09005	0.14	+0.8
2,035,208	+		HSERO_RS09005	0.14	-1.5
2,035,251	+		HSERO_RS09005	0.17	-0.0
2,035,674	+		HSERO_RS09005	0.48	+0.8
2,035,675	-		HSERO_RS09005	0.48	+1.4
2,036,103	+		HSERO_RS09005	0.79	+1.4
2,036,498	-				+0.5
2,036,574	-				+2.8
2,036,661	+				+0.1
2,036,662	-				+0.3
2,036,691	-		HSERO_RS09010	0.11	+0.9
2,036,706	+		HSERO_RS09010	0.12	+0.2
2,036,809	+				+0.3
2,036,876	+		HSERO_RS09010	0.22	-0.4
2,037,155	-		HSERO_RS09010	0.39	-0.1
2,037,235	-		HSERO_RS09010	0.43	+0.0