Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07985

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,825,541	+				+1.6
1,825,554	-		HSERO_RS07975	0.70	+0.5
1,825,575	+		HSERO_RS07975	0.72	-0.5
1,825,575	+		HSERO_RS07975	0.72	+0.0
1,825,614	+		HSERO_RS07975	0.74	+4.1
1,825,622	-		HSERO_RS07975	0.75	-0.7
1,825,622	-		HSERO_RS07975	0.75	+0.6
1,825,757	-		HSERO_RS07975	0.83	+0.5
1,825,877	+				-1.6
1,825,965	-				+0.1
1,825,989	+				+0.3
1,825,993	-				-0.1
1,826,198	+				+0.2
1,826,288	+		HSERO_RS07980	0.36	+0.3
1,826,417	-		HSERO_RS07980	0.80	+0.5
1,826,446	-				-0.3
1,826,596	+				-0.4
1,826,659	-				-0.2
1,826,731	-		HSERO_RS07985	0.15	-0.4
1,826,731	-		HSERO_RS07985	0.15	+0.4
1,826,830	-		HSERO_RS07985	0.22	-0.5
1,826,892	+		HSERO_RS07985	0.26	-0.0
1,826,916	+		HSERO_RS07985	0.28	-0.4
1,827,036	+		HSERO_RS07985	0.37	-0.2
1,827,036	+		HSERO_RS07985	0.37	+0.2
1,827,378	-		HSERO_RS07985	0.61	-0.2
1,827,508	+		HSERO_RS07985	0.71	-0.3
1,828,341	-		HSERO_RS07990	0.31	-0.9
1,828,621	-		HSERO_RS07990	0.51	-0.1
1,828,648	-		HSERO_RS07990	0.53	-1.1
1,828,875	+		HSERO_RS07990	0.69	-2.4