Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05715

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,297,451	-		HSERO_RS05710	0.40	+1.0
1,297,489	-		HSERO_RS05710	0.43	-0.2
1,297,537	+		HSERO_RS05710	0.46	+0.1
1,297,634	-		HSERO_RS05710	0.53	-0.0
1,297,861	+		HSERO_RS05710	0.68	-1.2
1,298,008	-		HSERO_RS05710	0.78	+1.5
1,298,048	+		HSERO_RS05710	0.81	-0.1
1,298,048	+		HSERO_RS05710	0.81	+0.0
1,298,147	+		HSERO_RS05710	0.88	+0.1
1,298,372	+				+0.3
1,298,380	-				+1.0
1,298,703	-		HSERO_RS05715	0.28	-0.4
1,298,775	+		HSERO_RS05715	0.34	-0.0
1,299,007	+		HSERO_RS05715	0.53	+0.0
1,299,124	+		HSERO_RS05715	0.63	-0.7
1,299,137	-		HSERO_RS05715	0.64	+0.0
1,299,333	-		HSERO_RS05715	0.80	-1.3
1,299,498	+				+0.1
1,299,503	+				-0.3
1,299,810	+		HSERO_RS05720	0.22	+0.6
1,299,858	-		HSERO_RS05720	0.26	-0.3
1,299,924	+		HSERO_RS05720	0.32	+0.6
1,299,925	+		HSERO_RS05720	0.32	+1.2
1,300,028	+		HSERO_RS05720	0.41	+1.6
1,300,061	-		HSERO_RS05720	0.44	+0.9
1,300,078	-		HSERO_RS05720	0.46	-0.3
1,300,180	-		HSERO_RS05720	0.55	-0.1
1,300,509	-		HSERO_RS05720	0.84	+0.6