Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05335

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,178,329	+				-0.1
1,178,451	-		HSERO_RS05330	0.24	-1.1
1,178,724	-		HSERO_RS05330	0.61	-0.1
1,178,756	+		HSERO_RS05330	0.65	+0.5
1,178,992	-				-0.6
1,179,092	+				+0.5
1,179,505	+		HSERO_RS05335	0.28	-0.0
1,179,514	-		HSERO_RS05335	0.28	+0.3
1,179,590	+		HSERO_RS05335	0.33	-1.4
1,179,645	+		HSERO_RS05335	0.36	-1.0
1,179,699	+		HSERO_RS05335	0.39	+0.4
1,179,704	+		HSERO_RS05335	0.40	+0.7
1,179,707	-		HSERO_RS05335	0.40	+0.1
1,179,750	-		HSERO_RS05335	0.43	+0.5
1,179,750	-		HSERO_RS05335	0.43	-0.3
1,179,800	-		HSERO_RS05335	0.46	-0.3
1,179,883	-		HSERO_RS05335	0.51	-1.2
1,180,060	-		HSERO_RS05335	0.61	+0.1
1,180,060	-		HSERO_RS05335	0.61	-0.2
1,180,065	-		HSERO_RS05335	0.62	-0.7
1,180,101	+		HSERO_RS05335	0.64	+1.5
1,180,137	-		HSERO_RS05335	0.66	+0.8
1,180,471	+		HSERO_RS05335	0.86	-0.4
1,180,509	+		HSERO_RS05335	0.89	-1.6
1,180,519	+		HSERO_RS05335	0.89	+2.7
1,180,532	-				+0.4
1,180,804	-		HSERO_RS05340	0.13	-1.5
1,181,079	-		HSERO_RS05340	0.51	-0.6
1,181,233	-		HSERO_RS05340	0.72	-1.0
1,181,259	+		HSERO_RS05340	0.75	+0.2
1,181,262	-		HSERO_RS05340	0.76	+0.3
1,181,375	-				-0.8