Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05085

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,122,532	-				+0.5
1,122,536	+				-0.1
1,122,536	+				-0.0
1,122,627	-				-0.4
1,122,718	-				-0.5
1,122,953	+		HSERO_RS05080	0.42	+0.4
1,123,009	+		HSERO_RS05080	0.50	-0.4
1,123,044	+		HSERO_RS05080	0.55	+0.5
1,123,050	-		HSERO_RS05080	0.56	+0.6
1,123,283	-				-0.2
1,123,342	+				+0.0
1,123,342	+				-0.2
1,123,342	+				+0.6
1,123,342	+				+0.3
1,123,352	+				+0.6
1,123,367	+				-0.4
1,123,367	+				-2.6
1,123,479	+				-1.6
1,123,645	-		HSERO_RS05085	0.13	+0.1
1,123,650	-		HSERO_RS05085	0.14	-0.0
1,123,733	+		HSERO_RS05085	0.22	-0.1
1,123,781	-		HSERO_RS05085	0.26	+0.9
1,123,900	-		HSERO_RS05085	0.38	-0.3
1,123,900	-		HSERO_RS05085	0.38	-0.8
1,123,929	+		HSERO_RS05085	0.40	+0.4
1,124,127	+		HSERO_RS05085	0.59	+0.4
1,124,266	-		HSERO_RS05085	0.73	+0.3
1,124,320	+		HSERO_RS05085	0.78	+0.9
1,124,335	+		HSERO_RS05085	0.79	+0.6
1,124,448	-				+0.3
1,124,629	-				+0.2
1,124,772	+		HSERO_RS05090	0.14	-0.5
1,124,780	-		HSERO_RS05090	0.15	+0.1
1,124,834	-		HSERO_RS05090	0.19	+0.1
1,124,996	-		HSERO_RS05090	0.29	+0.2
1,125,221	+		HSERO_RS05090	0.44	+0.5
1,125,432	-		HSERO_RS05090	0.58	-0.2