Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02710 and HSERO_RS02715 are separated by 329 nucleotides HSERO_RS02715 and HSERO_RS02720 overlap by 4 nucleotides HSERO_RS02720 and HSERO_RS02725 are separated by 30 nucleotides
HSERO_RS02710: HSERO_RS02710 - Zn-dependent hydrolase, at 599,528 to 600,487
_RS02710
HSERO_RS02715: HSERO_RS02715 - IclR family transcriptional regulator, at 600,817 to 601,590
_RS02715
HSERO_RS02720: HSERO_RS02720 - IclR family transcriptional regulator, at 601,587 to 602,435
_RS02720
HSERO_RS02725: HSERO_RS02725 - histidine kinase, at 602,466 to 605,003
_RS02725
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 599.818 kb on + strand, within HSERO_RS02710 at 599.863 kb on + strand at 599.893 kb on + strand, within HSERO_RS02710 at 599.987 kb on + strand, within HSERO_RS02710 at 599.997 kb on + strand, within HSERO_RS02710 at 600.002 kb on + strand, within HSERO_RS02710 at 600.074 kb on + strand, within HSERO_RS02710 at 600.082 kb on - strand, within HSERO_RS02710 at 600.311 kb on + strand, within HSERO_RS02710 at 600.319 kb on - strand, within HSERO_RS02710 at 600.357 kb on - strand, within HSERO_RS02710 at 600.443 kb on - strand at 600.582 kb on + strand at 600.582 kb on + strand at 600.617 kb on + strand at 600.728 kb on + strand at 600.745 kb on - strand at 601.023 kb on + strand, within HSERO_RS02715 at 601.131 kb on + strand, within HSERO_RS02715 at 601.232 kb on + strand, within HSERO_RS02715 at 601.837 kb on + strand, within HSERO_RS02720 at 601.845 kb on - strand, within HSERO_RS02720 at 601.926 kb on - strand, within HSERO_RS02720 at 601.948 kb on - strand, within HSERO_RS02720 at 602.219 kb on - strand, within HSERO_RS02720 at 602.360 kb on + strand at 602.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 599,818 + HSERO_RS02710 0.30 +0.0 599,863 + +1.0 599,893 + HSERO_RS02710 0.38 -1.1 599,987 + HSERO_RS02710 0.48 +0.5 599,997 + HSERO_RS02710 0.49 +0.0 600,002 + HSERO_RS02710 0.49 -0.5 600,074 + HSERO_RS02710 0.57 -0.4 600,082 - HSERO_RS02710 0.58 -0.0 600,311 + HSERO_RS02710 0.82 -0.0 600,319 - HSERO_RS02710 0.82 -1.8 600,357 - HSERO_RS02710 0.86 +0.2 600,443 - +1.0 600,582 + +1.5 600,582 + -0.5 600,617 + +1.3 600,728 + -0.1 600,745 - +1.8 601,023 + HSERO_RS02715 0.27 -1.3 601,131 + HSERO_RS02715 0.41 +0.4 601,232 + HSERO_RS02715 0.54 -0.3 601,837 + HSERO_RS02720 0.29 -0.5 601,845 - HSERO_RS02720 0.30 +1.5 601,926 - HSERO_RS02720 0.40 -1.2 601,948 - HSERO_RS02720 0.43 +0.0 602,219 - HSERO_RS02720 0.74 +0.4 602,360 + +2.2 602,450 - +0.1
Or see this region's nucleotide sequence