Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02700

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02695 and HSERO_RS02700 are separated by 122 nucleotidesHSERO_RS02700 and HSERO_RS02705 are separated by 49 nucleotides HSERO_RS02695: HSERO_RS02695 - major facilitator transporter, at 595,990 to 597,342 _RS02695 HSERO_RS02700: HSERO_RS02700 - hypothetical protein, at 597,465 to 597,680 _RS02700 HSERO_RS02705: HSERO_RS02705 - FAD-dependent oxidoreductase, at 597,730 to 599,499 _RS02705 Position (kb) 597 598Strain fitness (log2 ratio) -1 0 1 2at 596.556 kb on - strand, within HSERO_RS02695at 596.646 kb on + strand, within HSERO_RS02695at 597.089 kb on + strand, within HSERO_RS02695at 597.159 kb on + strand, within HSERO_RS02695at 597.202 kb on + strand, within HSERO_RS02695at 597.204 kb on + strand, within HSERO_RS02695at 597.283 kb on - strandat 597.310 kb on - strandat 597.376 kb on + strandat 597.530 kb on - strand, within HSERO_RS02700at 597.664 kb on - strandat 597.667 kb on + strandat 597.675 kb on - strandat 597.711 kb on + strandat 597.719 kb on - strandat 597.722 kb on + strandat 597.730 kb on - strandat 598.241 kb on + strand, within HSERO_RS02705at 598.626 kb on - strand, within HSERO_RS02705

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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596,556 - HSERO_RS02695 0.42 -1.4
596,646 + HSERO_RS02695 0.48 +0.1
597,089 + HSERO_RS02695 0.81 +1.4
597,159 + HSERO_RS02695 0.86 +0.1
597,202 + HSERO_RS02695 0.90 +0.4
597,204 + HSERO_RS02695 0.90 +0.5
597,283 - -1.2
597,310 - -0.9
597,376 + +1.0
597,530 - HSERO_RS02700 0.30 +0.9
597,664 - +0.4
597,667 + +2.2
597,675 - +0.3
597,711 + +0.7
597,719 - -0.4
597,722 + +0.0
597,730 - +0.2
598,241 + HSERO_RS02705 0.29 +0.3
598,626 - HSERO_RS02705 0.51 +0.6

Or see this region's nucleotide sequence