Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02690 and HSERO_RS02695 are separated by 309 nucleotides HSERO_RS02695 and HSERO_RS02700 are separated by 122 nucleotides HSERO_RS02700 and HSERO_RS02705 are separated by 49 nucleotides
HSERO_RS02690: HSERO_RS02690 - taurine ABC transporter permease, at 593,935 to 595,680
_RS02690
HSERO_RS02695: HSERO_RS02695 - major facilitator transporter, at 595,990 to 597,342
_RS02695
HSERO_RS02700: HSERO_RS02700 - hypothetical protein, at 597,465 to 597,680
_RS02700
HSERO_RS02705: HSERO_RS02705 - FAD-dependent oxidoreductase, at 597,730 to 599,499
_RS02705
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 595.051 kb on - strand, within HSERO_RS02690 at 595.237 kb on + strand, within HSERO_RS02690 at 595.558 kb on - strand at 595.558 kb on - strand at 595.558 kb on - strand at 595.577 kb on + strand at 595.577 kb on + strand at 595.632 kb on - strand at 595.725 kb on + strand at 595.725 kb on + strand at 596.077 kb on - strand at 596.105 kb on + strand at 596.113 kb on - strand at 596.113 kb on - strand at 596.137 kb on - strand, within HSERO_RS02695 at 596.271 kb on + strand, within HSERO_RS02695 at 596.271 kb on + strand, within HSERO_RS02695 at 596.440 kb on - strand, within HSERO_RS02695 at 596.556 kb on - strand, within HSERO_RS02695 at 596.646 kb on + strand, within HSERO_RS02695 at 597.089 kb on + strand, within HSERO_RS02695 at 597.159 kb on + strand, within HSERO_RS02695 at 597.202 kb on + strand, within HSERO_RS02695 at 597.204 kb on + strand, within HSERO_RS02695 at 597.283 kb on - strand at 597.310 kb on - strand at 597.376 kb on + strand at 597.530 kb on - strand, within HSERO_RS02700 at 597.664 kb on - strand at 597.667 kb on + strand at 597.675 kb on - strand at 597.711 kb on + strand at 597.719 kb on - strand at 597.722 kb on + strand at 597.730 kb on - strand at 598.241 kb on + strand, within HSERO_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 595,051 - HSERO_RS02690 0.64 +0.6 595,237 + HSERO_RS02690 0.75 +0.5 595,558 - +0.1 595,558 - -0.3 595,558 - +0.4 595,577 + -0.1 595,577 + +0.9 595,632 - +0.8 595,725 + -0.2 595,725 + -2.3 596,077 - +0.1 596,105 + -0.6 596,113 - +0.4 596,113 - +2.6 596,137 - HSERO_RS02695 0.11 -0.2 596,271 + HSERO_RS02695 0.21 +1.6 596,271 + HSERO_RS02695 0.21 +2.3 596,440 - HSERO_RS02695 0.33 +0.6 596,556 - HSERO_RS02695 0.42 -1.4 596,646 + HSERO_RS02695 0.48 +0.1 597,089 + HSERO_RS02695 0.81 +1.4 597,159 + HSERO_RS02695 0.86 +0.1 597,202 + HSERO_RS02695 0.90 +0.4 597,204 + HSERO_RS02695 0.90 +0.5 597,283 - -1.2 597,310 - -0.9 597,376 + +1.0 597,530 - HSERO_RS02700 0.30 +0.9 597,664 - +0.4 597,667 + +2.2 597,675 - +0.3 597,711 + +0.7 597,719 - -0.4 597,722 + +0.0 597,730 - +0.2 598,241 + HSERO_RS02705 0.29 +0.3
Or see this region's nucleotide sequence