Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02650 and HSERO_RS02655 are separated by 90 nucleotides HSERO_RS02655 and HSERO_RS02660 are separated by 318 nucleotides
HSERO_RS02650: HSERO_RS02650 - dihydroxy-acid dehydratase, at 581,219 to 583,081
_RS02650
HSERO_RS02655: HSERO_RS02655 - transporter, at 583,172 to 585,052
_RS02655
HSERO_RS02660: HSERO_RS02660 - TonB-dependent receptor, at 585,371 to 587,440
_RS02660
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 582.203 kb on + strand, within HSERO_RS02650 at 582.222 kb on + strand, within HSERO_RS02650 at 582.228 kb on + strand, within HSERO_RS02650 at 582.257 kb on + strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.768 kb on - strand, within HSERO_RS02650 at 582.824 kb on - strand, within HSERO_RS02650 at 583.030 kb on - strand at 583.156 kb on - strand at 583.341 kb on + strand at 583.359 kb on - strand at 583.464 kb on - strand, within HSERO_RS02655 at 583.816 kb on + strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 584.049 kb on + strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.168 kb on + strand, within HSERO_RS02655 at 584.280 kb on + strand, within HSERO_RS02655 at 584.280 kb on + strand, within HSERO_RS02655 at 584.360 kb on - strand, within HSERO_RS02655 at 584.516 kb on - strand, within HSERO_RS02655 at 584.579 kb on + strand, within HSERO_RS02655 at 584.630 kb on - strand, within HSERO_RS02655 at 584.736 kb on + strand, within HSERO_RS02655 at 584.870 kb on + strand at 585.253 kb on + strand at 585.512 kb on + strand at 585.619 kb on - strand, within HSERO_RS02660 at 585.732 kb on - strand, within HSERO_RS02660 at 585.733 kb on + strand, within HSERO_RS02660 at 585.899 kb on + strand, within HSERO_RS02660
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 582,203 + HSERO_RS02650 0.53 -2.9 582,222 + HSERO_RS02650 0.54 -4.6 582,228 + HSERO_RS02650 0.54 -4.7 582,257 + HSERO_RS02650 0.56 -1.5 582,299 - HSERO_RS02650 0.58 -3.5 582,299 - HSERO_RS02650 0.58 -2.0 582,637 + HSERO_RS02650 0.76 -4.7 582,637 + HSERO_RS02650 0.76 -1.5 582,768 - HSERO_RS02650 0.83 -2.4 582,824 - HSERO_RS02650 0.86 -2.2 583,030 - -3.4 583,156 - -0.8 583,341 + -0.4 583,359 - +0.5 583,464 - HSERO_RS02655 0.16 -1.7 583,816 + HSERO_RS02655 0.34 +0.3 583,911 - HSERO_RS02655 0.39 +0.4 583,911 - HSERO_RS02655 0.39 +1.1 584,049 + HSERO_RS02655 0.47 -1.4 584,057 - HSERO_RS02655 0.47 +0.1 584,057 - HSERO_RS02655 0.47 -0.2 584,057 - HSERO_RS02655 0.47 +0.0 584,168 + HSERO_RS02655 0.53 +1.1 584,280 + HSERO_RS02655 0.59 +0.8 584,280 + HSERO_RS02655 0.59 +0.3 584,360 - HSERO_RS02655 0.63 +0.6 584,516 - HSERO_RS02655 0.71 +0.5 584,579 + HSERO_RS02655 0.75 +0.8 584,630 - HSERO_RS02655 0.78 -0.3 584,736 + HSERO_RS02655 0.83 +0.1 584,870 + +0.3 585,253 + -1.4 585,512 + +0.5 585,619 - HSERO_RS02660 0.12 +0.1 585,732 - HSERO_RS02660 0.17 -0.3 585,733 + HSERO_RS02660 0.17 +0.0 585,899 + HSERO_RS02660 0.26 +0.4
Or see this region's nucleotide sequence