Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00090 and HSERO_RS00095 are separated by 19 nucleotides HSERO_RS00095 and HSERO_RS00100 are separated by 330 nucleotides
HSERO_RS00090: HSERO_RS00090 - hypothetical protein, at 26,030 to 27,307
_RS00090
HSERO_RS00095: HSERO_RS00095 - AMP-dependent synthetase, at 27,327 to 28,946
_RS00095
HSERO_RS00100: HSERO_RS00100 - type VI secretion protein, at 29,277 to 32,018
_RS00100
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.479 kb on - strand, within HSERO_RS00090 at 26.557 kb on + strand, within HSERO_RS00090 at 26.623 kb on - strand, within HSERO_RS00090 at 26.850 kb on - strand, within HSERO_RS00090 at 26.912 kb on + strand, within HSERO_RS00090 at 27.007 kb on + strand, within HSERO_RS00090 at 27.500 kb on + strand, within HSERO_RS00095 at 27.500 kb on - strand, within HSERO_RS00095 at 27.824 kb on - strand, within HSERO_RS00095 at 27.824 kb on - strand, within HSERO_RS00095 at 27.845 kb on + strand, within HSERO_RS00095 at 27.845 kb on - strand, within HSERO_RS00095 at 27.860 kb on - strand, within HSERO_RS00095 at 27.955 kb on + strand, within HSERO_RS00095 at 28.183 kb on + strand, within HSERO_RS00095 at 28.194 kb on - strand, within HSERO_RS00095 at 28.249 kb on + strand, within HSERO_RS00095 at 28.292 kb on + strand, within HSERO_RS00095 at 28.342 kb on + strand, within HSERO_RS00095 at 28.350 kb on - strand, within HSERO_RS00095 at 28.710 kb on - strand, within HSERO_RS00095 at 28.752 kb on - strand, within HSERO_RS00095 at 28.937 kb on - strand at 28.984 kb on + strand at 29.019 kb on + strand at 29.027 kb on - strand at 29.215 kb on + strand at 29.591 kb on - strand, within HSERO_RS00100 at 29.596 kb on + strand, within HSERO_RS00100 at 29.609 kb on - strand, within HSERO_RS00100 at 29.846 kb on + strand, within HSERO_RS00100 at 29.881 kb on - strand, within HSERO_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 26,479 - HSERO_RS00090 0.35 -0.7 26,557 + HSERO_RS00090 0.41 +0.6 26,623 - HSERO_RS00090 0.46 -0.2 26,850 - HSERO_RS00090 0.64 -0.0 26,912 + HSERO_RS00090 0.69 +0.6 27,007 + HSERO_RS00090 0.76 +0.6 27,500 + HSERO_RS00095 0.11 -0.5 27,500 - HSERO_RS00095 0.11 +0.8 27,824 - HSERO_RS00095 0.31 +1.8 27,824 - HSERO_RS00095 0.31 +0.1 27,845 + HSERO_RS00095 0.32 -1.0 27,845 - HSERO_RS00095 0.32 +1.1 27,860 - HSERO_RS00095 0.33 +0.1 27,955 + HSERO_RS00095 0.39 +0.4 28,183 + HSERO_RS00095 0.53 -0.1 28,194 - HSERO_RS00095 0.54 +0.4 28,249 + HSERO_RS00095 0.57 -1.1 28,292 + HSERO_RS00095 0.60 +0.4 28,342 + HSERO_RS00095 0.63 +0.1 28,350 - HSERO_RS00095 0.63 -0.5 28,710 - HSERO_RS00095 0.85 +0.6 28,752 - HSERO_RS00095 0.88 +0.1 28,937 - -0.1 28,984 + +0.2 29,019 + -0.5 29,027 - -0.4 29,215 + -0.8 29,591 - HSERO_RS00100 0.11 +1.2 29,596 + HSERO_RS00100 0.12 -0.8 29,609 - HSERO_RS00100 0.12 -0.1 29,846 + HSERO_RS00100 0.21 +0.6 29,881 - HSERO_RS00100 0.22 -1.9
Or see this region's nucleotide sequence